Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DCC84_RS29265 Genome accession   NZ_CP038001
Coordinates   6202597..6203805 (+) Length   402 a.a.
NCBI ID   WP_134327332.1    Uniprot ID   -
Organism   Pseudomonas sp. SXM-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6197597..6208805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCC84_RS29240 (DCC84_29240) nadC 6198949..6199797 (+) 849 WP_008437288.1 carboxylating nicotinate-nucleotide diphosphorylase -
  DCC84_RS29245 (DCC84_29245) - 6199932..6200237 (-) 306 WP_008437299.1 DUF6388 family protein -
  DCC84_RS29255 (DCC84_29255) - 6200486..6201895 (-) 1410 WP_134327331.1 O-antigen ligase -
  DCC84_RS29260 (DCC84_29260) - 6201982..6202395 (-) 414 WP_087694624.1 pilin -
  DCC84_RS29265 (DCC84_29265) pilC 6202597..6203805 (+) 1209 WP_134327332.1 type II secretion system F family protein Machinery gene
  DCC84_RS29270 (DCC84_29270) pilD 6203802..6204680 (+) 879 WP_371928411.1 A24 family peptidase Machinery gene
  DCC84_RS29275 (DCC84_29275) coaE 6204677..6205300 (+) 624 WP_008437307.1 dephospho-CoA kinase -
  DCC84_RS29280 (DCC84_29280) yacG 6205297..6205497 (+) 201 WP_003215918.1 DNA gyrase inhibitor YacG -
  DCC84_RS29285 (DCC84_29285) - 6205494..6205709 (-) 216 WP_003215917.1 hypothetical protein -
  DCC84_RS29290 (DCC84_29290) - 6205775..6206464 (-) 690 WP_003215915.1 energy-coupling factor ABC transporter permease -
  DCC84_RS29295 (DCC84_29295) - 6206461..6206928 (-) 468 WP_134327333.1 FAD/FMN-containing dehydrogenase -
  DCC84_RS29300 (DCC84_29300) - 6207031..6207660 (+) 630 WP_008437312.1 DUF1780 domain-containing protein -
  DCC84_RS29305 (DCC84_29305) - 6207750..6207923 (+) 174 WP_010174986.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43054.36 Da        Isoelectric Point: 9.7183

>NTDB_id=351188 DCC84_RS29265 WP_134327332.1 6202597..6203805(+) (pilC) [Pseudomonas sp. SXM-1]
MNDVSAIYAWEGVNRKGRKVSGETRGHNPALIKALLRQQGINPGRVRKKFAGWPSLALPVKPAEIALFTRQLATLLKAGI
ALLQALDIIAEGFDNRHMGVLVQGLKQEIAAGSSLAVALQKYPRYFDDLYCNLVAAGEQAGALEALLERVAIHLEKSEQL
KARIKKAMTYPVTVLAVATAVSAILLIHVVPQFQGLFAGVDAQLPGFTLGVISLSEFMQQSWWMLTLAAGAGFAGLRKAY
RSSTGFRHWLDASLLKAPVAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAGATGNGQFKQAINRMRHDVATGIQLN
ESMAISGLFPGMAIQMTAIGEESGTLDNMLEKVACHYEADVDNLVDNLTSLMEPLIMVVLGGIVGALVLAMYLPIFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=351188 DCC84_RS29265 WP_134327332.1 6202597..6203805(+) (pilC) [Pseudomonas sp. SXM-1]
ATGAATGATGTTTCAGCGATCTATGCCTGGGAAGGCGTCAACCGCAAAGGGCGCAAGGTATCCGGAGAAACCCGCGGTCA
CAATCCCGCCCTGATCAAGGCACTGCTGCGCCAGCAAGGTATCAATCCTGGGCGCGTACGCAAGAAATTCGCCGGTTGGC
CGAGCCTCGCCCTGCCGGTCAAACCGGCAGAGATCGCCCTCTTCACCCGCCAATTGGCGACGCTGCTGAAGGCTGGTATC
GCACTTTTACAGGCGCTGGATATCATCGCCGAGGGCTTCGACAACCGGCATATGGGGGTGCTGGTACAAGGCTTGAAGCA
GGAGATCGCCGCCGGCAGCAGCCTGGCTGTCGCCTTGCAGAAATACCCACGCTACTTCGATGATCTGTACTGCAACCTGG
TTGCGGCGGGTGAACAGGCGGGCGCACTCGAAGCGCTGCTGGAAAGGGTGGCCATTCACCTGGAAAAAAGCGAACAGCTG
AAAGCCAGAATCAAGAAGGCCATGACCTATCCCGTGACGGTACTGGCAGTCGCCACCGCTGTCAGCGCAATCCTGCTGAT
TCACGTGGTGCCGCAGTTTCAGGGGTTGTTTGCCGGCGTCGATGCACAACTGCCGGGCTTTACCCTGGGCGTCATCAGCC
TGTCGGAGTTCATGCAGCAAAGCTGGTGGATGCTGACCCTGGCCGCGGGTGCCGGTTTCGCAGGACTGCGCAAAGCCTAT
CGCTCGTCCACAGGCTTTCGCCACTGGCTCGATGCCAGTTTGTTGAAAGCTCCCGTGGCAGGCACACTGCTGAAAAAATC
GGCGGTCGCCCGCTATGCTCGCACGCTCTCGACCACCTTTGCGGCGGGCGTTCCATTGGTGCAGGCATTGGATTCCGTGG
CCGGCGCCACGGGTAACGGGCAGTTCAAACAGGCAATCAATCGTATGCGGCACGACGTTGCAACCGGAATCCAGCTGAAT
GAATCCATGGCCATAAGCGGCCTGTTTCCAGGCATGGCGATCCAGATGACGGCTATCGGCGAGGAGTCGGGCACCCTCGA
TAACATGCTGGAAAAAGTCGCCTGCCACTACGAGGCTGACGTCGATAACCTGGTGGACAACCTTACCAGCCTCATGGAGC
CGCTGATCATGGTGGTACTCGGCGGCATCGTCGGGGCATTGGTGCTGGCCATGTACCTGCCGATCTTTCAACTCGGTACA
GCCTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.804

99.005

0.602
  pilC Acinetobacter baylyi ADP1

53.865

99.751

0.537
  pilC Acinetobacter baumannii D1279779

53.418

98.259

0.525
  pilC Legionella pneumophila strain ERS1305867

48.608

98.259

0.478
  pilG Neisseria gonorrhoeae MS11

40.609

98.01

0.398
  pilG Neisseria meningitidis 44/76-A

39.848

98.01

0.391
  pilC Vibrio cholerae strain A1552

40.051

97.512

0.391
  pilC Vibrio campbellii strain DS40M4

38.636

98.507

0.381
  pilC Thermus thermophilus HB27

36.842

99.254

0.366

Multiple sequence alignment