Detailed information NTG0351189

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DCC84_RS29270
• Genome accession: NZ_CP038001
• Coordinates: 6203802..6204680 (+)
• Length: 292 a.a.
• NCBI ID: WP_371928411.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SXM-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6198802..6209680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DCC84_RS29240 (DCC84_29240)	nadC	6198949..6199797 (+)	849	WP_008437288.1	carboxylating nicotinate-nucleotide diphosphorylase	-
DCC84_RS29245 (DCC84_29245)	-	6199932..6200237 (-)	306	WP_008437299.1	DUF6388 family protein	-
DCC84_RS29255 (DCC84_29255)	-	6200486..6201895 (-)	1410	WP_134327331.1	O-antigen ligase	-
DCC84_RS29260 (DCC84_29260)	-	6201982..6202395 (-)	414	WP_087694624.1	pilin	-
DCC84_RS29265 (DCC84_29265)	pilC	6202597..6203805 (+)	1209	WP_134327332.1	type II secretion system F family protein	Machinery gene
DCC84_RS29270 (DCC84_29270)	pilD	6203802..6204680 (+)	879	WP_371928411.1	A24 family peptidase	Machinery gene
DCC84_RS29275 (DCC84_29275)	coaE	6204677..6205300 (+)	624	WP_008437307.1	dephospho-CoA kinase	-
DCC84_RS29280 (DCC84_29280)	yacG	6205297..6205497 (+)	201	WP_003215918.1	DNA gyrase inhibitor YacG	-
DCC84_RS29285 (DCC84_29285)	-	6205494..6205709 (-)	216	WP_003215917.1	hypothetical protein	-
DCC84_RS29290 (DCC84_29290)	-	6205775..6206464 (-)	690	WP_003215915.1	energy-coupling factor ABC transporter permease	-
DCC84_RS29295 (DCC84_29295)	-	6206461..6206928 (-)	468	WP_134327333.1	FAD/FMN-containing dehydrogenase	-
DCC84_RS29300 (DCC84_29300)	-	6207031..6207660 (+)	630	WP_008437312.1	DUF1780 domain-containing protein	-
DCC84_RS29305 (DCC84_29305)	-	6207750..6207923 (+)	174	WP_010174986.1	DUF3094 family protein	-
DCC84_RS29310 (DCC84_29310)	-	6207984..6209282 (+)	1299	WP_134327334.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32017.07 Da
• Isoelectric Point: 7.9946

>NTDB_id=351189 DCC84_RS29270 WP_371928411.1 6203802..6204680(+) (pilD) [Pseudomonas sp. SXM-1]
MSTPLTEILVYQPWVFVSGALLLGLIVGSFINVLVWRLPKMLEREWRAQAHEVLGLPAEPVAAPYNLMHPNSCCPRCNHP
IRPWENIPLLSYVLLKGRCSSCHQSIGARYPITELACGLISAVVAWHFGFGWAAGAVSLLSWGLLAMSLIDADHQLLPDV
LVLPLLWLGLILNSFGVFVSLHDALWGAVAGYMSLWSVFWVFKLITGKDGMGHGDFKLLAMLGAWGGWQILPMTLLLSSL
VGGMGGLILLRLRKAQASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 879 bp

>NTDB_id=351189 DCC84_RS29270 WP_371928411.1 6203802..6204680(+) (pilD) [Pseudomonas sp. SXM-1]
TTGAGCACGCCACTGACTGAGATCCTCGTTTATCAGCCGTGGGTGTTTGTGTCAGGCGCGTTGCTGCTGGGCTTGATTGT
CGGCAGTTTTATCAACGTGCTGGTATGGCGCCTGCCGAAGATGCTGGAACGTGAATGGCGAGCCCAGGCCCATGAAGTAC
TGGGCCTTCCCGCCGAGCCTGTCGCCGCGCCCTATAACCTGATGCACCCAAACTCCTGCTGCCCGCGTTGCAACCACCCG
ATTCGCCCCTGGGAGAATATTCCGCTGCTCAGTTATGTACTGCTCAAGGGACGTTGCTCAAGTTGCCATCAATCTATTGG
CGCGCGTTATCCCATCACTGAACTGGCGTGCGGGCTGATCTCGGCGGTTGTCGCCTGGCATTTCGGTTTTGGCTGGGCAG
CCGGAGCGGTGTCGTTGTTGAGTTGGGGCTTGCTGGCGATGAGCCTGATCGATGCAGACCACCAACTGCTGCCGGATGTG
CTGGTGCTGCCGTTGCTCTGGCTGGGCCTGATCCTAAACAGCTTTGGCGTTTTTGTGTCATTGCACGATGCGCTGTGGGG
CGCGGTAGCCGGTTACATGAGCCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATTACCGGCAAGGACGGGATGGGGCACG
GGGATTTCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGATGACGCTGTTGCTGTCTTCCCTG
GTGGGTGGGATGGGAGGCCTGATTCTATTGCGCCTGCGCAAAGCCCAGGCATCCACTCCAATGCCTTTTGGTCCGTATCT
GGCAATTGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (139-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.873	97.26	0.524
pilD	Vibrio campbellii strain DS40M4	50.877	97.603	0.497
pilD	Neisseria gonorrhoeae MS11	47.778	92.466	0.442
pilD	Acinetobacter nosocomialis M2	47.191	91.438	0.432
pilD	Acinetobacter baumannii D1279779	47.191	91.438	0.432