Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | E2I05_RS20165 | Genome accession | NZ_CP037952 |
| Coordinates | 5094770..5096479 (+) | Length | 569 a.a. |
| NCBI ID | WP_121854476.1 | Uniprot ID | A0A3A6TI48 |
| Organism | Parashewanella spongiae strain HJ039 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5089770..5101479
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E2I05_RS20150 | - | 5091259..5091729 (-) | 471 | WP_121854473.1 | hypothetical protein | - |
| E2I05_RS20155 | - | 5091798..5093255 (-) | 1458 | WP_121854474.1 | hypothetical protein | - |
| E2I05_RS22810 | - | 5094160..5094609 (+) | 450 | WP_121854475.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| E2I05_RS20165 | pilB | 5094770..5096479 (+) | 1710 | WP_121854476.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| E2I05_RS20170 | pilC | 5096689..5097957 (+) | 1269 | WP_121854477.1 | type II secretion system F family protein | Machinery gene |
| E2I05_RS20175 | - | 5098081..5100144 (+) | 2064 | WP_121854478.1 | hypothetical protein | - |
| E2I05_RS20180 | pilD | 5100238..5101155 (+) | 918 | WP_121854479.1 | A24 family peptidase | Machinery gene |
Sequence
Protein
Download Length: 569 a.a. Molecular weight: 63050.17 Da Isoelectric Point: 5.5498
>NTDB_id=350925 E2I05_RS20165 WP_121854476.1 5094770..5096479(+) (pilB) [Parashewanella spongiae strain HJ039]
MPTSGLHLGLSSLLLRKQLLTQPQLDALIQKSRKNNHTLVQALVADNIVTARDLAQLGHQEYGTPLLDIAEFDLTSIPEE
YLNRKLIERHRCLPLFKRGNRLYIAQSDPTNIAALEDFQFNVGMHTESVLVEDDKLAIALERVLEDDLDSLDISDLDEAS
LGDIEVADTERKHDDNEGDGKDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRVDGVLQEVSQPPIGLASRIAA
RLKVMSKLDIAERRVPQDGRIKLKLGRNRSTDFRVSSLPTLWGEKIVMRILDSASAQLGIEKLGYEPEQQKLYTDALAQP
QGMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGVNQVHINLKAGLTFASALKSFLRQDPDIVMVGEIR
DLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLSNMGVQGYNIASSVSLIIAQRLARRLCQHCKTPEEIPDTELLRLGF
SQAHIDSQFTVFKPVGCEQCTGGFKGRVGIYEVMKMSEELARVIMEGGNSLELLKIAKQQGMADLRTSGLLKVMQGISSI
NEINRVTSF
MPTSGLHLGLSSLLLRKQLLTQPQLDALIQKSRKNNHTLVQALVADNIVTARDLAQLGHQEYGTPLLDIAEFDLTSIPEE
YLNRKLIERHRCLPLFKRGNRLYIAQSDPTNIAALEDFQFNVGMHTESVLVEDDKLAIALERVLEDDLDSLDISDLDEAS
LGDIEVADTERKHDDNEGDGKDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRVDGVLQEVSQPPIGLASRIAA
RLKVMSKLDIAERRVPQDGRIKLKLGRNRSTDFRVSSLPTLWGEKIVMRILDSASAQLGIEKLGYEPEQQKLYTDALAQP
QGMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGVNQVHINLKAGLTFASALKSFLRQDPDIVMVGEIR
DLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLSNMGVQGYNIASSVSLIIAQRLARRLCQHCKTPEEIPDTELLRLGF
SQAHIDSQFTVFKPVGCEQCTGGFKGRVGIYEVMKMSEELARVIMEGGNSLELLKIAKQQGMADLRTSGLLKVMQGISSI
NEINRVTSF
Nucleotide
Download Length: 1710 bp
>NTDB_id=350925 E2I05_RS20165 WP_121854476.1 5094770..5096479(+) (pilB) [Parashewanella spongiae strain HJ039]
ATGCCCACCAGCGGACTGCATCTTGGTCTTTCCAGTTTATTACTACGCAAACAGCTACTGACTCAGCCGCAGCTCGATGC
GCTGATCCAAAAATCCCGTAAAAATAACCACACCTTAGTGCAAGCCCTCGTTGCCGATAATATAGTCACCGCCCGCGATC
TCGCCCAGCTTGGCCACCAAGAATACGGCACGCCCTTATTAGATATTGCTGAATTTGACCTTACCAGCATTCCAGAAGAA
TACTTAAACCGTAAACTCATCGAGCGCCATCGCTGCTTGCCGCTGTTTAAACGCGGCAACCGACTGTACATTGCCCAAAG
CGACCCTACGAATATTGCCGCCCTTGAGGACTTTCAATTTAATGTCGGCATGCACACCGAATCGGTATTGGTTGAAGACG
ATAAGCTCGCTATCGCCCTTGAAAGAGTGCTCGAAGATGACTTAGACAGCCTAGACATTAGCGACCTTGACGAAGCCTCC
CTCGGCGACATCGAAGTCGCCGACACTGAGCGCAAACACGATGACAACGAGGGTGACGGCAAAGACGACGCACCAATTGT
TATTTACATCAATAAAATTCTCACCGATGCCATTCGTAAAGGGGCGTCGGATTTACACTTTGAGCCCTATGAAAAACGCT
ATCGCATCCGTTTTCGTGTCGATGGCGTATTGCAAGAAGTGTCGCAGCCGCCCATAGGCTTAGCTTCACGCATTGCCGCC
CGTTTAAAGGTGATGTCTAAACTGGATATTGCCGAGCGCCGTGTCCCCCAAGATGGCCGCATTAAGTTAAAGCTAGGCCG
TAACCGCAGTACCGATTTTCGTGTCAGCAGCTTGCCCACACTGTGGGGCGAAAAAATCGTGATGCGTATTTTAGACTCCG
CTTCAGCGCAGCTGGGTATTGAAAAGCTAGGCTATGAGCCTGAGCAGCAAAAGTTATACACCGACGCTCTTGCACAGCCC
CAAGGGATGATACTGGTCACAGGGCCAACGGGCTCGGGTAAAACCGTATCTTTATATACTGGTCTTAATATTCTCAATAC
CGAAGAGCGCAATATCTCTACCGCCGAAGATCCCGTTGAAATCAACCTCGAAGGCGTTAATCAAGTCCACATTAATCTAA
AAGCCGGGTTAACCTTTGCCTCGGCATTAAAATCGTTTTTGCGTCAAGACCCTGATATTGTGATGGTGGGTGAAATACGG
GATTTAGAAACCGCCGAAATAGCCATTAAAGCGGCGCAAACTGGTCACTTAGTCTTGTCGACCTTACACACTAACTCAGC
GGCAGAAACCTTAACCCGTTTATCCAATATGGGCGTACAAGGCTATAACATTGCCAGCTCAGTAAGTTTGATTATTGCCC
AGCGCCTTGCAAGGCGTTTGTGCCAGCATTGCAAAACTCCTGAAGAGATCCCCGATACCGAATTACTCCGCTTAGGTTTC
AGCCAAGCGCACATCGACAGCCAATTTACGGTATTTAAGCCCGTTGGCTGCGAGCAATGTACTGGTGGATTTAAAGGTCG
CGTCGGGATTTACGAAGTGATGAAAATGTCGGAAGAGTTAGCCCGAGTCATTATGGAAGGCGGCAATTCCCTTGAATTGC
TGAAAATCGCTAAGCAACAAGGTATGGCTGATTTACGCACTTCAGGTTTACTTAAAGTCATGCAAGGCATCAGCAGTATT
AACGAAATCAACCGAGTCACCAGCTTTTAG
ATGCCCACCAGCGGACTGCATCTTGGTCTTTCCAGTTTATTACTACGCAAACAGCTACTGACTCAGCCGCAGCTCGATGC
GCTGATCCAAAAATCCCGTAAAAATAACCACACCTTAGTGCAAGCCCTCGTTGCCGATAATATAGTCACCGCCCGCGATC
TCGCCCAGCTTGGCCACCAAGAATACGGCACGCCCTTATTAGATATTGCTGAATTTGACCTTACCAGCATTCCAGAAGAA
TACTTAAACCGTAAACTCATCGAGCGCCATCGCTGCTTGCCGCTGTTTAAACGCGGCAACCGACTGTACATTGCCCAAAG
CGACCCTACGAATATTGCCGCCCTTGAGGACTTTCAATTTAATGTCGGCATGCACACCGAATCGGTATTGGTTGAAGACG
ATAAGCTCGCTATCGCCCTTGAAAGAGTGCTCGAAGATGACTTAGACAGCCTAGACATTAGCGACCTTGACGAAGCCTCC
CTCGGCGACATCGAAGTCGCCGACACTGAGCGCAAACACGATGACAACGAGGGTGACGGCAAAGACGACGCACCAATTGT
TATTTACATCAATAAAATTCTCACCGATGCCATTCGTAAAGGGGCGTCGGATTTACACTTTGAGCCCTATGAAAAACGCT
ATCGCATCCGTTTTCGTGTCGATGGCGTATTGCAAGAAGTGTCGCAGCCGCCCATAGGCTTAGCTTCACGCATTGCCGCC
CGTTTAAAGGTGATGTCTAAACTGGATATTGCCGAGCGCCGTGTCCCCCAAGATGGCCGCATTAAGTTAAAGCTAGGCCG
TAACCGCAGTACCGATTTTCGTGTCAGCAGCTTGCCCACACTGTGGGGCGAAAAAATCGTGATGCGTATTTTAGACTCCG
CTTCAGCGCAGCTGGGTATTGAAAAGCTAGGCTATGAGCCTGAGCAGCAAAAGTTATACACCGACGCTCTTGCACAGCCC
CAAGGGATGATACTGGTCACAGGGCCAACGGGCTCGGGTAAAACCGTATCTTTATATACTGGTCTTAATATTCTCAATAC
CGAAGAGCGCAATATCTCTACCGCCGAAGATCCCGTTGAAATCAACCTCGAAGGCGTTAATCAAGTCCACATTAATCTAA
AAGCCGGGTTAACCTTTGCCTCGGCATTAAAATCGTTTTTGCGTCAAGACCCTGATATTGTGATGGTGGGTGAAATACGG
GATTTAGAAACCGCCGAAATAGCCATTAAAGCGGCGCAAACTGGTCACTTAGTCTTGTCGACCTTACACACTAACTCAGC
GGCAGAAACCTTAACCCGTTTATCCAATATGGGCGTACAAGGCTATAACATTGCCAGCTCAGTAAGTTTGATTATTGCCC
AGCGCCTTGCAAGGCGTTTGTGCCAGCATTGCAAAACTCCTGAAGAGATCCCCGATACCGAATTACTCCGCTTAGGTTTC
AGCCAAGCGCACATCGACAGCCAATTTACGGTATTTAAGCCCGTTGGCTGCGAGCAATGTACTGGTGGATTTAAAGGTCG
CGTCGGGATTTACGAAGTGATGAAAATGTCGGAAGAGTTAGCCCGAGTCATTATGGAAGGCGGCAATTCCCTTGAATTGC
TGAAAATCGCTAAGCAACAAGGTATGGCTGATTTACGCACTTCAGGTTTACTTAAAGTCATGCAAGGCATCAGCAGTATT
AACGAAATCAACCGAGTCACCAGCTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baylyi ADP1 |
59.225 |
95.255 |
0.564 |
| pilB | Acinetobacter baumannii D1279779 |
56.239 |
100 |
0.562 |
| pilB | Legionella pneumophila strain ERS1305867 |
55.674 |
99.121 |
0.552 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
52.622 |
100 |
0.529 |
| pilB | Vibrio cholerae strain A1552 |
51.394 |
100 |
0.518 |
| pilB | Vibrio campbellii strain DS40M4 |
51.504 |
99.297 |
0.511 |
| pilF | Neisseria gonorrhoeae MS11 |
49.293 |
99.473 |
0.49 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.029 |
97.715 |
0.381 |
| pilF | Thermus thermophilus HB27 |
38.061 |
97.891 |
0.373 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
39.539 |
91.564 |
0.362 |