Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E2H97_RS17580 Genome accession   NZ_CP037951
Coordinates   3981901..3983169 (+) Length   422 a.a.
NCBI ID   WP_133408340.1    Uniprot ID   -
Organism   Parashewanella tropica strain MEBiC05444     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3976901..3988169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2H97_RS19080 - 3979130..3979549 (+) 420 WP_178074608.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  E2H97_RS17570 pilB 3979679..3981385 (+) 1707 WP_133408338.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E2H97_RS17575 - 3981487..3981774 (+) 288 WP_133408339.1 GIY-YIG nuclease family protein -
  E2H97_RS17580 pilC 3981901..3983169 (+) 1269 WP_133408340.1 type II secretion system F family protein Machinery gene
  E2H97_RS17585 pilD 3983273..3984190 (+) 918 WP_133408341.1 A24 family peptidase Machinery gene
  E2H97_RS17590 coaE 3984187..3984792 (+) 606 WP_133408342.1 dephospho-CoA kinase -
  E2H97_RS17595 zapD 3984802..3985533 (+) 732 WP_133408343.1 cell division protein ZapD -
  E2H97_RS17600 yacG 3985607..3985819 (+) 213 WP_133408344.1 DNA gyrase inhibitor YacG -
  E2H97_RS17605 mutT 3985819..3986211 (+) 393 WP_133408345.1 8-oxo-dGTP diphosphatase MutT -
  E2H97_RS17610 - 3986195..3986476 (-) 282 WP_133408346.1 HU family DNA-binding protein -
  E2H97_RS17615 - 3986669..3987067 (+) 399 WP_133408347.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46388.90 Da        Isoelectric Point: 10.2755

>NTDB_id=350905 E2H97_RS17580 WP_133408340.1 3981901..3983169(+) (pilC) [Parashewanella tropica strain MEBiC05444]
MATASVASKRAKKKRAKSKSEPKMFTFEWKGTNRDGKKTQGEIQASSVADVRVMLRTQGVMVKGVRKKSKSIFSGDKPIK
PMDIAMITRQIATMLSAGVPLVTTIEMLAKGHEKPKMRTLLGTILNELQSGVPLSDALRPHTRYFDELYVDLVAAGEHSG
ALDTVFDRIATYREKSEALKSKIKKAMFYPIAVILVAIAVTIGLLLFVVPQFEEIFRGFGAELPAFTQMVLGISRWLQEW
WWVFVIGIIVGIVGFVNTHRKSQHFRDQVDAALLRIPLIGEILHKGAMARFARTLATTFAAGVPLIEGLESAAGASGNAV
YRKALLQVRQEVMTGMQMNMALRTTKLFPDMLVQMVMIGEESGALDDMLNKLANIYEMQVDDAVDGLSSLIEPILMVVIG
GIVGALIVAMYLPIFQMGQVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=350905 E2H97_RS17580 WP_133408340.1 3981901..3983169(+) (pilC) [Parashewanella tropica strain MEBiC05444]
ATGGCAACAGCATCGGTTGCTTCAAAGCGAGCAAAAAAGAAACGGGCGAAATCCAAATCCGAGCCTAAGATGTTTACCTT
TGAATGGAAAGGCACCAATCGCGACGGTAAGAAAACCCAAGGTGAAATCCAAGCCAGCAGTGTTGCCGATGTGCGGGTGA
TGCTCCGTACTCAAGGGGTGATGGTAAAAGGCGTTCGCAAAAAGTCGAAATCCATATTCAGCGGTGATAAGCCCATAAAA
CCTATGGATATCGCCATGATCACCCGCCAAATTGCCACTATGCTGTCGGCAGGTGTTCCCCTTGTTACCACCATCGAAAT
GCTGGCCAAAGGCCATGAAAAACCTAAAATGCGTACCTTACTTGGCACCATTTTAAATGAACTCCAATCAGGTGTACCTC
TATCAGATGCCCTACGCCCACATACTCGTTATTTTGACGAACTCTACGTAGACTTAGTGGCTGCCGGTGAACACTCAGGT
GCGCTCGATACCGTATTTGATCGCATTGCCACCTACCGTGAAAAATCGGAAGCCTTAAAATCAAAAATTAAAAAGGCCAT
GTTTTACCCGATTGCGGTGATCCTTGTCGCCATTGCGGTAACCATAGGTCTACTGCTGTTTGTGGTTCCACAATTTGAAG
AGATTTTCCGAGGGTTCGGTGCTGAACTTCCTGCGTTTACCCAAATGGTATTAGGCATCTCCCGTTGGCTGCAAGAATGG
TGGTGGGTGTTTGTTATTGGTATTATTGTTGGGATTGTCGGGTTTGTAAATACTCACAGGAAATCTCAACACTTTCGAGA
TCAAGTCGATGCCGCTCTGCTAAGAATACCGCTAATTGGCGAGATTTTACATAAAGGTGCTATGGCACGTTTTGCTCGTA
CTTTAGCGACAACCTTTGCGGCAGGCGTGCCATTAATTGAAGGTTTAGAATCCGCTGCTGGCGCCTCTGGCAATGCCGTT
TATCGCAAAGCGTTACTGCAAGTGCGACAAGAGGTGATGACAGGGATGCAAATGAACATGGCCTTACGAACCACAAAATT
ATTCCCTGATATGCTGGTGCAAATGGTGATGATTGGTGAAGAATCTGGCGCGCTAGATGATATGCTAAACAAACTGGCTA
ATATCTACGAAATGCAAGTCGACGATGCGGTGGATGGTCTTTCAAGTTTGATTGAACCTATCCTTATGGTTGTTATCGGT
GGTATTGTTGGCGCCTTAATTGTGGCTATGTACTTACCTATCTTCCAGATGGGTCAAGTAGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.924

93.602

0.505
  pilC Acinetobacter baylyi ADP1

50.985

96.209

0.491
  pilC Acinetobacter baumannii D1279779

51.25

94.787

0.486
  pilC Legionella pneumophila strain ERS1305867

49.015

96.209

0.472
  pilC Vibrio cholerae strain A1552

45.729

94.313

0.431
  pilC Vibrio campbellii strain DS40M4

44.279

95.261

0.422
  pilG Neisseria gonorrhoeae MS11

42.75

94.787

0.405
  pilG Neisseria meningitidis 44/76-A

42.394

95.024

0.403

Multiple sequence alignment