Detailed information NTG0350906

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E2H97_RS17585
• Genome accession: NZ_CP037951
• Coordinates: 3983273..3984190 (+)
• Length: 305 a.a.
• NCBI ID: WP_133408341.1
• Uniprot ID: -
• Organism: Parashewanella tropica strain MEBiC05444
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3978273..3989190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E2H97_RS19080	-	3979130..3979549 (+)	420	WP_178074608.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
E2H97_RS17570	pilB	3979679..3981385 (+)	1707	WP_133408338.1	type IV-A pilus assembly ATPase PilB	Machinery gene
E2H97_RS17575	-	3981487..3981774 (+)	288	WP_133408339.1	GIY-YIG nuclease family protein	-
E2H97_RS17580	pilC	3981901..3983169 (+)	1269	WP_133408340.1	type II secretion system F family protein	Machinery gene
E2H97_RS17585	pilD	3983273..3984190 (+)	918	WP_133408341.1	A24 family peptidase	Machinery gene
E2H97_RS17590	coaE	3984187..3984792 (+)	606	WP_133408342.1	dephospho-CoA kinase	-
E2H97_RS17595	zapD	3984802..3985533 (+)	732	WP_133408343.1	cell division protein ZapD	-
E2H97_RS17600	yacG	3985607..3985819 (+)	213	WP_133408344.1	DNA gyrase inhibitor YacG	-
E2H97_RS17605	mutT	3985819..3986211 (+)	393	WP_133408345.1	8-oxo-dGTP diphosphatase MutT	-
E2H97_RS17610	-	3986195..3986476 (-)	282	WP_133408346.1	HU family DNA-binding protein	-
E2H97_RS17615	-	3986669..3987067 (+)	399	WP_133408347.1	hypothetical protein	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33837.37 Da
• Isoelectric Point: 7.6830

>NTDB_id=350906 E2H97_RS17585 WP_133408341.1 3983273..3984190(+) (pilD) [Parashewanella tropica strain MEBiC05444]
MKELITIFTQQPALFIGLAFIFAALIGSFLNVVIHRLPVIMKREWQQECNQYLNEYQPDIVKQVGEKALNKPIDNYPDTY
NLIVPTSACPKCNGKIKPWHNLPIIGWLLLKGKCASCQTSISARYPIIEFVTASLVTALAWHFGPSLHFVMATILTLGLV
ALTGIDLDEMLLPDQITLPLLWLGLLLNLNDVFIDLNSALIGAAAGYLSLWSVFWLFKLLTGKEGMGYGDFKLMAVFGAW
LGWQMLPLVILLSSAVGAIVGISMIITKKLHANNPIPFGPYIALAGWIALIWGQKIVDWYLVNAL

Nucleotide

• Length: 918 bp

>NTDB_id=350906 E2H97_RS17585 WP_133408341.1 3983273..3984190(+) (pilD) [Parashewanella tropica strain MEBiC05444]
ATGAAAGAACTAATAACAATATTCACTCAACAGCCAGCCTTATTTATCGGGCTGGCTTTTATTTTCGCAGCACTCATAGG
CAGCTTTTTAAATGTGGTGATCCACCGACTACCCGTGATAATGAAGCGTGAATGGCAGCAAGAATGTAATCAATACCTCA
ATGAATATCAGCCTGATATTGTAAAGCAGGTGGGTGAAAAGGCGCTCAACAAGCCCATTGATAACTATCCTGATACCTAC
AACCTTATCGTTCCCACGTCAGCATGCCCCAAATGCAATGGAAAAATAAAGCCTTGGCATAATCTGCCCATCATTGGTTG
GTTATTACTGAAAGGCAAATGTGCCAGTTGTCAGACGTCTATCTCTGCTCGTTACCCCATCATAGAGTTCGTCACTGCTA
GCTTAGTGACAGCATTGGCATGGCACTTTGGACCTAGCCTACATTTTGTCATGGCTACCATTCTTACCTTAGGATTAGTG
GCATTAACGGGTATTGATCTAGATGAAATGCTACTGCCTGATCAAATCACTTTACCTCTATTGTGGTTAGGACTCTTATT
AAACCTGAATGACGTATTTATTGATTTAAACAGTGCGTTAATTGGCGCTGCTGCTGGTTATCTAAGTCTATGGTCAGTAT
TTTGGCTGTTTAAGCTTCTGACAGGTAAAGAAGGCATGGGTTATGGTGATTTTAAGTTAATGGCCGTTTTTGGCGCTTGG
CTTGGCTGGCAAATGTTACCTTTGGTAATTTTGCTTTCTTCTGCAGTCGGTGCCATTGTTGGGATCAGCATGATCATCAC
TAAAAAGTTGCATGCTAACAACCCCATTCCTTTCGGCCCTTACATTGCCTTAGCGGGATGGATTGCTTTAATTTGGGGAC
AAAAAATTGTGGATTGGTATTTGGTGAACGCACTATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (154-262)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	50.331	99.016	0.498
pilD	Vibrio cholerae strain A1552	48.667	98.361	0.479
pilD	Acinetobacter baumannii D1279779	47.682	99.016	0.472
pilD	Acinetobacter nosocomialis M2	47.351	99.016	0.469
pilD	Neisseria gonorrhoeae MS11	45.517	95.082	0.433