Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EY643_RS04685 Genome accession   NZ_CP036422
Coordinates   1038755..1039972 (-) Length   405 a.a.
NCBI ID   WP_152661101.1    Uniprot ID   A0A5P9NIG9
Organism   Halioglobus maricola strain IMCC14385     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1033755..1044972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EY643_RS04665 (EY643_04655) argJ 1035612..1036838 (+) 1227 WP_152661097.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  EY643_RS04670 (EY643_04660) mutT 1036839..1037234 (+) 396 WP_152661098.1 8-oxo-dGTP diphosphatase MutT -
  EY643_RS04675 (EY643_04665) coaE 1037247..1037849 (-) 603 WP_152661099.1 dephospho-CoA kinase -
  EY643_RS04680 (EY643_04670) pilD 1037846..1038709 (-) 864 WP_152661100.1 prepilin peptidase Machinery gene
  EY643_RS04685 (EY643_04675) pilC 1038755..1039972 (-) 1218 WP_152661101.1 type II secretion system F family protein Machinery gene
  EY643_RS04690 (EY643_04680) pilB 1040003..1041718 (-) 1716 WP_152661102.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EY643_RS04695 (EY643_04685) - 1042146..1042631 (+) 486 WP_152661103.1 pilin -
  EY643_RS04700 (EY643_04690) - 1042740..1044686 (+) 1947 WP_152661104.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43819.40 Da        Isoelectric Point: 8.6403

>NTDB_id=348818 EY643_RS04685 WP_152661101.1 1038755..1039972(-) (pilC) [Halioglobus maricola strain IMCC14385]
MATATGNDLYIWAGTDKNGRTTKGEINASSQAMAKAQLRRQGVVPKSVKKKPKPLFGGKGKPIKPEDIATFTRQLATMMK
AGVPLVQSFEIVADGSEKETMRDMINAIKNDVASGSGLAPALEKYPRHFDDLYCSLVASGEESGTLEVMLARVATYKEKS
EALKRKIKKAMTYPLAVIAVAVIVTVVLLVKVVPTFAETFRGFGSDLPAFTLFVLNISEVVQEWWFIFLLISIAAFFGFR
EAKFRSVKFAEFLDKVMLKMPIIGGIVHDAIIARFARTLSTTFAAGVPLVDALESTAGAAGNAIYAKAIRQIKDDVTTGT
TLYASIKTTGLFPNLLLQMVSIGEESGSLDEMLDKVADHYEEAVDNAVDNLSALLEPMIMSILGVLVGGLLVAMYLPIFM
LGTVI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=348818 EY643_RS04685 WP_152661101.1 1038755..1039972(-) (pilC) [Halioglobus maricola strain IMCC14385]
ATGGCAACAGCAACTGGAAACGATTTATATATTTGGGCAGGCACCGATAAAAACGGCCGCACCACCAAGGGCGAGATCAA
TGCGTCCAGCCAGGCGATGGCCAAGGCGCAGTTGCGCCGCCAGGGTGTCGTGCCAAAATCGGTTAAGAAAAAACCCAAAC
CTCTGTTTGGCGGCAAGGGCAAACCGATCAAGCCCGAGGACATTGCCACCTTTACCCGCCAGCTGGCAACAATGATGAAA
GCAGGTGTGCCCCTCGTGCAGAGCTTCGAGATCGTGGCCGACGGCTCCGAGAAAGAGACCATGCGCGACATGATCAACGC
CATCAAGAACGATGTGGCCTCAGGCTCCGGCCTGGCGCCTGCACTGGAAAAATACCCCCGCCACTTCGACGACCTCTATT
GCAGCCTGGTCGCTTCCGGTGAAGAATCCGGCACCCTGGAGGTCATGCTGGCCAGGGTTGCAACGTACAAGGAAAAAAGC
GAGGCCCTAAAGCGCAAAATCAAAAAGGCGATGACTTACCCGCTGGCGGTAATCGCTGTCGCAGTTATCGTCACCGTGGT
GCTGCTGGTGAAAGTTGTGCCGACTTTCGCAGAAACCTTCCGTGGATTCGGATCCGATCTGCCGGCATTCACCCTCTTTG
TGCTCAATATTTCCGAGGTTGTACAAGAGTGGTGGTTTATCTTCCTCCTCATATCAATCGCAGCATTCTTCGGCTTCAGG
GAAGCCAAATTCCGATCGGTGAAATTTGCTGAGTTCCTCGACAAGGTAATGCTCAAGATGCCCATTATTGGTGGCATTGT
TCACGATGCGATCATCGCCCGCTTTGCGCGAACATTGTCGACAACCTTCGCCGCCGGTGTTCCGCTGGTAGATGCACTGG
AATCTACCGCAGGTGCCGCAGGTAATGCCATCTATGCCAAGGCCATTCGCCAGATCAAGGACGATGTGACCACAGGTACC
ACGCTTTATGCGTCGATCAAGACCACTGGCCTGTTCCCCAATCTGCTCTTGCAGATGGTGTCCATCGGCGAGGAGTCGGG
TTCTCTGGACGAAATGCTCGACAAGGTAGCCGATCACTATGAGGAAGCTGTAGATAACGCCGTCGACAACCTCAGTGCAC
TACTGGAACCCATGATCATGTCAATACTGGGTGTACTGGTGGGCGGACTTCTGGTCGCTATGTATCTGCCCATCTTCATG
CTGGGTACGGTGATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9NIG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.214

99.259

0.568
  pilC Acinetobacter baumannii D1279779

57.683

98.025

0.565
  pilC Acinetobacter baylyi ADP1

56.281

98.272

0.553
  pilC Legionella pneumophila strain ERS1305867

55.051

97.778

0.538
  pilG Neisseria gonorrhoeae MS11

45.34

98.025

0.444
  pilG Neisseria meningitidis 44/76-A

45.088

98.025

0.442
  pilC Vibrio cholerae strain A1552

42.424

97.778

0.415
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402

Multiple sequence alignment