Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   EY643_RS04680 Genome accession   NZ_CP036422
Coordinates   1037846..1038709 (-) Length   287 a.a.
NCBI ID   WP_152661100.1    Uniprot ID   -
Organism   Halioglobus maricola strain IMCC14385     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1032846..1043709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EY643_RS04660 (EY643_04650) secA 1032896..1035601 (+) 2706 WP_152661096.1 preprotein translocase subunit SecA -
  EY643_RS04665 (EY643_04655) argJ 1035612..1036838 (+) 1227 WP_152661097.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  EY643_RS04670 (EY643_04660) mutT 1036839..1037234 (+) 396 WP_152661098.1 8-oxo-dGTP diphosphatase MutT -
  EY643_RS04675 (EY643_04665) coaE 1037247..1037849 (-) 603 WP_152661099.1 dephospho-CoA kinase -
  EY643_RS04680 (EY643_04670) pilD 1037846..1038709 (-) 864 WP_152661100.1 prepilin peptidase Machinery gene
  EY643_RS04685 (EY643_04675) pilC 1038755..1039972 (-) 1218 WP_152661101.1 type II secretion system F family protein Machinery gene
  EY643_RS04690 (EY643_04680) pilB 1040003..1041718 (-) 1716 WP_152661102.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EY643_RS04695 (EY643_04685) - 1042146..1042631 (+) 486 WP_152661103.1 pilin -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31563.80 Da        Isoelectric Point: 6.0817

>NTDB_id=348817 EY643_RS04680 WP_152661100.1 1037846..1038709(-) (pilD) [Halioglobus maricola strain IMCC14385]
MSEVFALHPGFLYTVLMALGLIVGSFLNVVIHRLPIMMESRWRRDCCELLEVEQEKEEPKLTLATPNSHCPACQSAIKPW
QNIPVLSYLLLRGRCANCGVSISPRYPIVELVTGLMTLALAWFLPLSPALLGAMLLTWSLIALTMIDIDHQLLPDDITLP
LMWLGLLFNLFGTFVSIQDAVIGAMGGYLCLWSVFWIFKLLTGKEGMGYGDFKLLAALGAWLGWQMLPLIILLSSVVGAI
VGIALIIARNRGREVPIPFGPYLAAAGWLALVIGDTLNSNFFGIPPQ

Nucleotide


Download         Length: 864 bp        

>NTDB_id=348817 EY643_RS04680 WP_152661100.1 1037846..1038709(-) (pilD) [Halioglobus maricola strain IMCC14385]
ATGTCTGAAGTCTTCGCCCTGCACCCGGGGTTTCTTTACACCGTTCTGATGGCGCTGGGGCTGATCGTTGGCAGCTTTCT
CAATGTTGTCATACACCGATTACCCATCATGATGGAATCGCGCTGGCGCCGGGATTGCTGTGAGCTTTTAGAAGTAGAGC
AGGAGAAGGAAGAACCCAAACTCACACTGGCCACGCCGAATTCTCATTGCCCTGCCTGCCAATCGGCCATCAAGCCCTGG
CAAAATATACCGGTTCTCAGCTATCTCCTGCTACGTGGACGTTGTGCCAATTGTGGCGTAAGTATTTCACCGCGCTACCC
CATCGTTGAATTAGTTACCGGGCTGATGACACTCGCTCTTGCGTGGTTCTTGCCCCTTTCCCCCGCACTACTGGGAGCTA
TGCTACTCACCTGGTCGCTGATCGCACTGACCATGATAGACATCGACCACCAGCTACTACCGGATGATATAACCCTGCCA
CTGATGTGGCTTGGCCTGCTGTTCAACCTGTTCGGGACATTCGTTTCGATTCAGGACGCTGTGATCGGTGCGATGGGCGG
CTATCTCTGCCTGTGGAGCGTATTCTGGATATTCAAGCTTTTGACCGGCAAGGAGGGCATGGGCTATGGCGACTTCAAAC
TGCTCGCCGCTCTCGGTGCCTGGCTCGGCTGGCAAATGCTGCCGCTGATCATCCTGCTATCATCTGTTGTCGGCGCGATC
GTCGGCATAGCTTTGATCATTGCCCGCAATCGTGGCCGTGAGGTACCTATTCCCTTCGGTCCCTATCTGGCGGCGGCAGG
CTGGTTGGCACTGGTCATAGGCGACACACTCAACAGCAATTTTTTTGGCATCCCGCCGCAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-243)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.77

98.606

0.54
  pilD Vibrio campbellii strain DS40M4

53.901

98.258

0.53
  pilD Acinetobacter baumannii D1279779

52.381

95.122

0.498
  pilD Acinetobacter nosocomialis M2

52.015

95.122

0.495
  pilD Neisseria gonorrhoeae MS11

48.921

96.864

0.474

Multiple sequence alignment