Detailed information NTG0348783

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: EYF70_RS23560
• Genome accession: NZ_CP036401
• Coordinates: 5690718..5691929 (+)
• Length: 403 a.a.
• NCBI ID: WP_131147565.1
• Uniprot ID: A0A411X379
• Organism: Pseudoduganella albidiflava strain DSM 17472
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5685718..5696929

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EYF70_RS23550 (EYF70_23550)	-	5687562..5688833 (+)	1272	WP_131147563.1	HlyC/CorC family transporter	-
EYF70_RS23555 (EYF70_23555)	pilF	5689010..5690695 (+)	1686	WP_174800425.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EYF70_RS23560 (EYF70_23560)	pilC	5690718..5691929 (+)	1212	WP_131147565.1	type II secretion system F family protein	Machinery gene
EYF70_RS23565 (EYF70_23565)	-	5691965..5693659 (-)	1695	WP_131147566.1	SEC-C metal-binding domain-containing protein	-
EYF70_RS23570 (EYF70_23570)	-	5693757..5695106 (-)	1350	WP_218943718.1	MFS transporter	-

Sequence

Protein

• Length: 403 a.a.
• Molecular weight: 43838.82 Da
• Isoelectric Point: 9.8084

>NTDB_id=348783 EYF70_RS23560 WP_131147565.1 5690718..5691929(+) (pilC) [Pseudoduganella albidiflava strain DSM 17472]
MAHAGGIKESIFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGKKVTDKDITLFTRQLATMMKAG
VPLLQSFDIVGKGHANPAVSKLVMDLRSDIETGTSLNGAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTLA
MKAKIKSALTYPIAILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPTPTLVVMSISEFFVAWWYMIFGGLFAAVYFFFQA
WRRSLSMQQAMDRLLLRLPVFGAVIRKATIARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYLEATRNIQKEVSTGVSL
TVAMQNVEVFPNMVTQMVAIGEESGALDSMLGKVADFFEEEVDEAVASLSSLMEPAIMVILGVLIGGLVVAMYLPIFKLG
SVV

Nucleotide

• Length: 1212 bp

>NTDB_id=348783 EYF70_RS23560 WP_131147565.1 5690718..5691929(+) (pilC) [Pseudoduganella albidiflava strain DSM 17472]
ATGGCACACGCGGGCGGTATCAAGGAATCCATCTTTGCCTGGGAAGGCAAGGACAAGACGGGCAAGACCGTGCGCGGCGA
ACTGCGCGCGGGCGGCGAGGCGGTCGTCAACGTGACGCTGCGCCGCCAGGGCATCATGGTCACCAAGGTCAAGAAAAAGG
TGTACCGCTCCGGCAAGAAGGTCACCGACAAGGACATCACCCTGTTCACGCGCCAGCTGGCGACGATGATGAAGGCCGGC
GTGCCGCTGCTGCAATCGTTCGATATCGTCGGCAAGGGGCACGCCAATCCGGCCGTGTCGAAACTGGTGATGGACCTGCG
CTCGGACATCGAGACCGGCACCAGCCTGAATGGCGCGTTCCGCAAGTTCCCGCTGTATTTCGACCCGCTGTTCTGCAACC
TGGTGGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACGCGCCTGGCGATCTACAAGGAAAAGACGCTGGCG
ATGAAGGCCAAGATCAAGTCGGCGCTGACCTATCCGATCGCCATCCTGGCGGTGGCATTCATCGTCACGGCCGTGATCAT
GATCTGGGTGGTGCCGGCCTTCAAGGAGGTGTTCACCAGCTTCGGCGCGGATTTGCCGACGCCTACCCTGGTGGTGATGT
CGATCTCGGAATTCTTCGTGGCCTGGTGGTACATGATCTTCGGCGGCCTGTTCGCCGCCGTATATTTCTTCTTCCAGGCC
TGGCGCCGCTCGCTGTCCATGCAGCAGGCGATGGACCGCCTGCTGCTGAGGCTGCCGGTGTTCGGCGCCGTGATCAGGAA
AGCCACCATTGCAAGGTGGACGCGCACGCTGTCGACCATGTTCGCGGCCGGCGTGCCGCTGGTCGAAGCGCTCGATTCCG
TCGGCGGCGCCTCCGGGAATGCCGTCTACCTGGAAGCCACGCGCAATATCCAGAAAGAGGTGTCCACCGGGGTCAGCCTG
ACGGTGGCGATGCAGAACGTGGAAGTGTTTCCCAACATGGTGACGCAGATGGTGGCGATCGGCGAGGAATCCGGCGCGCT
GGACAGCATGCTGGGCAAGGTCGCCGACTTCTTCGAGGAAGAAGTCGACGAGGCGGTGGCGTCGCTGTCGTCGCTGATGG
AACCGGCCATCATGGTGATCCTGGGCGTGCTGATCGGCGGCCTGGTGGTGGCGATGTACCTGCCGATCTTCAAGCTCGGC
TCGGTGGTGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (273-395)

• Type II secretion system (T2SS), protein F (T2SSF) (69-192)

3D structure

• AlphaFold DB: A0A411X379

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	56	99.256	0.556
pilC	Legionella pneumophila strain ERS1305867	55.556	98.263	0.546
pilG	Neisseria gonorrhoeae MS11	51.345	100	0.521
pilG	Neisseria meningitidis 44/76-A	50.856	100	0.516
pilC	Acinetobacter baylyi ADP1	51.759	98.759	0.511
pilC	Acinetobacter baumannii D1279779	51.637	98.511	0.509
pilC	Vibrio campbellii strain DS40M4	40.1	99.007	0.397
pilC	Vibrio cholerae strain A1552	39.899	98.263	0.392
pilC	Thermus thermophilus HB27	37.093	99.007	0.367