Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXA24_RS09635 Genome accession   NZ_CP036376
Coordinates   1893317..1893733 (-) Length   138 a.a.
NCBI ID   WP_000609565.1    Uniprot ID   Q8DXI7
Organism   Streptococcus agalactiae strain Sag153     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1869880..1903644 1893317..1893733 within 0


Gene organization within MGE regions


Location: 1869880..1903644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA24_RS09495 (EXA24_09810) - 1869880..1870284 (-) 405 WP_000878126.1 type II toxin-antitoxin system HicB family antitoxin -
  EXA24_RS09500 (EXA24_09815) - 1870345..1870530 (-) 186 WP_000139836.1 type II toxin-antitoxin system HicA family toxin -
  EXA24_RS09505 (EXA24_09820) - 1870737..1872143 (-) 1407 WP_000405192.1 peptidoglycan amidohydrolase family protein -
  EXA24_RS09510 (EXA24_09825) - 1872147..1872476 (-) 330 WP_000192161.1 phage holin -
  EXA24_RS09515 (EXA24_09830) - 1872479..1872889 (-) 411 WP_001135353.1 hypothetical protein -
  EXA24_RS09520 (EXA24_09835) - 1872924..1873262 (-) 339 WP_000213866.1 hypothetical protein -
  EXA24_RS09525 (EXA24_09840) - 1873265..1873495 (-) 231 WP_001071121.1 hypothetical protein -
  EXA24_RS09530 (EXA24_09845) - 1873512..1877186 (-) 3675 WP_071661712.1 phage tail spike protein -
  EXA24_RS09535 (EXA24_09850) - 1877187..1877909 (-) 723 WP_000161557.1 hypothetical protein -
  EXA24_RS09540 (EXA24_09855) - 1877906..1880641 (-) 2736 WP_071661713.1 phage tail tape measure protein -
  EXA24_RS11375 (EXA24_09860) - 1880660..1880788 (-) 129 WP_011058372.1 hypothetical protein -
  EXA24_RS09545 (EXA24_09865) - 1880827..1881303 (-) 477 WP_000591558.1 hypothetical protein -
  EXA24_RS09550 (EXA24_09870) - 1881303..1881986 (-) 684 WP_167839541.1 phage tail protein -
  EXA24_RS09555 (EXA24_09875) - 1882001..1882345 (-) 345 WP_000508738.1 hypothetical protein -
  EXA24_RS09560 (EXA24_09880) - 1882332..1882679 (-) 348 WP_001074486.1 hypothetical protein -
  EXA24_RS09565 (EXA24_09885) - 1882679..1882984 (-) 306 WP_000842789.1 head-tail adaptor protein -
  EXA24_RS09570 (EXA24_09890) - 1882981..1883316 (-) 336 WP_000153862.1 hypothetical protein -
  EXA24_RS09575 (EXA24_09895) - 1883337..1884599 (-) 1263 WP_000749070.1 phage major capsid protein -
  EXA24_RS09580 (EXA24_09900) - 1884610..1885152 (-) 543 WP_000413200.1 HK97 family phage prohead protease -
  EXA24_RS09585 (EXA24_09905) - 1885202..1886344 (-) 1143 WP_001067328.1 phage portal protein -
  EXA24_RS09590 (EXA24_09910) - 1886353..1888065 (-) 1713 WP_000230004.1 terminase TerL endonuclease subunit -
  EXA24_RS09595 (EXA24_09915) - 1888058..1888543 (-) 486 WP_000601035.1 hypothetical protein -
  EXA24_RS09600 (EXA24_09920) - 1888631..1888879 (-) 249 WP_153204907.1 HNH endonuclease -
  EXA24_RS09605 (EXA24_09925) - 1888990..1889277 (-) 288 WP_000651009.1 hypothetical protein -
  EXA24_RS09610 (EXA24_09930) - 1889567..1890109 (-) 543 WP_001028147.1 site-specific integrase -
  EXA24_RS09615 (EXA24_09935) - 1890219..1890683 (-) 465 WP_000163169.1 hypothetical protein -
  EXA24_RS09620 (EXA24_09940) - 1890680..1891039 (-) 360 WP_011058373.1 helix-turn-helix transcriptional regulator -
  EXA24_RS09625 (EXA24_09945) - 1891024..1891284 (-) 261 WP_001008140.1 hypothetical protein -
  EXA24_RS09630 (EXA24_09950) ltrA 1891417..1892736 (-) 1320 WP_000561483.1 group II intron reverse transcriptase/maturase -
  EXA24_RS09635 (EXA24_09960) ssb 1893317..1893733 (-) 417 WP_000609565.1 single-stranded DNA-binding protein Machinery gene
  EXA24_RS09640 (EXA24_09965) - 1893723..1893929 (-) 207 WP_000748199.1 hypothetical protein -
  EXA24_RS09645 - 1893926..1894153 (-) 228 WP_070467532.1 DUF3310 domain-containing protein -
  EXA24_RS09650 (EXA24_09975) - 1894282..1894611 (-) 330 WP_000793494.1 DUF1372 family protein -
  EXA24_RS09655 (EXA24_09980) - 1894611..1895102 (-) 492 WP_000169322.1 MazG-like family protein -
  EXA24_RS09660 (EXA24_09985) - 1895231..1895293 (-) 63 Protein_1826 DNA cytosine methyltransferase -
  EXA24_RS09665 (EXA24_09990) - 1895293..1896114 (-) 822 WP_001067867.1 ATP-binding protein -
  EXA24_RS09670 (EXA24_09995) - 1896115..1896861 (-) 747 WP_000079054.1 conserved phage C-terminal domain-containing protein -
  EXA24_RS09675 (EXA24_10000) - 1896839..1897444 (-) 606 WP_079219474.1 hypothetical protein -
  EXA24_RS09680 (EXA24_10005) dnaB 1897444..1898775 (-) 1332 WP_000343908.1 replicative DNA helicase -
  EXA24_RS09685 (EXA24_10010) - 1898784..1898999 (-) 216 WP_001061697.1 hypothetical protein -
  EXA24_RS09690 (EXA24_10015) - 1899016..1899300 (-) 285 WP_000998973.1 hypothetical protein -
  EXA24_RS09695 (EXA24_10020) - 1899360..1900070 (-) 711 WP_001002368.1 ORF6C domain-containing protein -
  EXA24_RS09700 (EXA24_10025) - 1900073..1900282 (-) 210 WP_000082755.1 helix-turn-helix transcriptional regulator -
  EXA24_RS09705 (EXA24_10030) - 1900343..1900813 (+) 471 WP_001052630.1 hypothetical protein -
  EXA24_RS09710 (EXA24_10035) - 1900796..1900960 (-) 165 WP_000511144.1 hypothetical protein -
  EXA24_RS09715 (EXA24_10045) - 1901246..1901608 (+) 363 WP_000114553.1 helix-turn-helix transcriptional regulator -
  EXA24_RS09720 (EXA24_10050) - 1901615..1901995 (+) 381 WP_000762727.1 ImmA/IrrE family metallo-endopeptidase -
  EXA24_RS09725 (EXA24_10055) - 1902048..1902452 (+) 405 WP_001173134.1 DUF4429 domain-containing protein -
  EXA24_RS09730 (EXA24_10060) - 1902574..1903644 (+) 1071 WP_000179397.1 site-specific integrase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15674.52 Da        Isoelectric Point: 4.6604

>NTDB_id=348307 EXA24_RS09635 WP_000609565.1 1893317..1893733(-) (ssb) [Streptococcus agalactiae strain Sag153]
MINNVVLIGRLTRDVELRYTPSNIANATFNLAVNRNFKNAAGDREADFINCVMWRQQAENLANWTKKGMLIGITGRIQTR
SYENQQGQRIYVTEVVADSFQILEKRDNSTNQASMDDQLPPSFGNSQPMDISDDDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=348307 EXA24_RS09635 WP_000609565.1 1893317..1893733(-) (ssb) [Streptococcus agalactiae strain Sag153]
ATGATCAATAATGTTGTACTTATTGGCCGCTTGACAAGAGATGTTGAGCTACGTTACACGCCGTCAAACATCGCAAACGC
TACTTTTAACCTAGCAGTCAATCGAAATTTCAAGAATGCTGCTGGTGATCGTGAAGCTGATTTCATCAACTGTGTGATGT
GGCGACAACAAGCTGAAAACTTGGCCAATTGGACGAAAAAAGGAATGCTGATTGGTATTACTGGACGAATCCAGACAAGA
AGCTACGAAAATCAGCAAGGTCAGCGTATCTATGTGACTGAGGTTGTTGCTGACAGCTTCCAGATTCTTGAAAAGCGTGA
TAATTCAACGAACCAGGCAAGCATGGATGACCAATTGCCACCATCATTTGGAAATAGTCAGCCTATGGATATTTCAGATG
ATGATCTACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DXI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.667
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.575

100

0.638
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.259

100

0.428
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.717

76.812

0.42
  ssbB/cilA Streptococcus pneumoniae R6

40.559

100

0.42
  ssbB/cilA Streptococcus mitis SK321

40.559

100

0.42
  ssbB/cilA Streptococcus mitis NCTC 12261

40.559

100

0.42
  ssbB/cilA Streptococcus pneumoniae Rx1

40.559

100

0.42
  ssbB/cilA Streptococcus pneumoniae D39

40.559

100

0.42
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50.943

76.812

0.391

Multiple sequence alignment