Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   SSUBM407_RS00750 Genome accession   NC_012926
Coordinates   119887..120837 (+) Length   316 a.a.
NCBI ID   WP_011921718.1    Uniprot ID   -
Organism   Streptococcus suis BM407     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 114887..125837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUBM407_RS00740 (SSUBM407_0121) - 118458..118823 (+) 366 WP_002936568.1 DUF1033 family protein -
  SSUBM407_RS00745 (SSUBM407_0122) - 118858..119801 (-) 944 Protein_115 S66 family peptidase -
  SSUBM407_RS00750 (SSUBM407_0123) comYA 119887..120837 (+) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  SSUBM407_RS00755 (SSUBM407_0124) comYB 120749..121786 (+) 1038 WP_011921719.1 competence type IV pilus assembly protein ComGB Machinery gene
  SSUBM407_RS00760 (SSUBM407_0125) comYC 121788..122069 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  SSUBM407_RS00765 (SSUBM407_0126) comGD 122050..122457 (+) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  SSUBM407_RS00770 (SSUBM407_0127) comYE 122429..122722 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  SSUBM407_RS00775 (SSUBM407_0128) comGF/cglF 122709..123143 (+) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  SSUBM407_RS00780 (SSUBM407_0129) comGG 123121..123435 (+) 315 WP_228475123.1 competence type IV pilus minor pilin ComGG -
  SSUBM407_RS00785 (SSUBM407_0130) comYH 123588..124541 (+) 954 WP_011922562.1 class I SAM-dependent methyltransferase Machinery gene
  SSUBM407_RS00790 (SSUBM407_0131) - 124591..125778 (+) 1188 WP_012775473.1 acetate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35412.26 Da        Isoelectric Point: 5.4713

>NTDB_id=34648 SSUBM407_RS00750 WP_011921718.1 119887..120837(+) (comYA) [Streptococcus suis BM407]
MIQEKARKMIEEAVADRVSDIYLVPRGECYQVYHRIMDDREFVQDLAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVGPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSADQWNAQIDRLFAAGHISLRQAETEKITLGSPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=34648 SSUBM407_RS00750 WP_011921718.1 119887..120837(+) (comYA) [Streptococcus suis BM407]
ATGATTCAAGAAAAAGCAAGAAAGATGATTGAAGAGGCGGTGGCGGATAGGGTCAGTGACATTTATCTGGTTCCTCGTGG
TGAGTGTTACCAAGTCTATCATCGTATCATGGACGATCGGGAATTTGTGCAAGACTTGGCTGAGGAGGAAGTAACAGCCA
TCATCAGCCATTTCAAGTTTTTAGCAGGTTTAAATGTTGGCGAAAAACGCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGGAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGAGATTATCGTGGCAAGGAAAGTTTGGTTATCCGCCTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCCGAGCGGCTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACACTTATGTACCATCTTGCTAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACCATCGAGGATCCTGTTGAAATCAAGCAGGAGGACATGCTGCAACTCCAGCTCAATGAAGCCATCGGAGCCAC
CTACGACAATCTGATCAAACTGTCCCTCCGTCATCGACCAGACTTGCTCATCATCGGTGAAATTCGGGATGCGGAAACCG
CTCGAGCAGTCATTCGAGCCAGCCTGACAGGAGCTACCGTTTTCTCAACAGTTCATGCAAGGTCTATTTCGGGTGTCTAT
GCTCGTATGTTGGAATTGGGTGTCGGTCCTGAGGAGTTAAACAATGCCCTTCAAGGTATTGCCTATCAACGTTTAATCGG
GGGAGGAGGTGTGGTAGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGCGCAAATTGATCGGC
TTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTACCCTTGGCTCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.387

98.101

0.671
  comYA Streptococcus mutans UA159

67.203

98.418

0.661
  comYA Streptococcus mutans UA140

67.203

98.418

0.661
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.63

98.418

0.636
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.516

98.101

0.633
  comGA Lactococcus lactis subsp. cremoris KW2

52.997

100

0.532
  comGA Latilactobacillus sakei subsp. sakei 23K

41.155

87.658

0.361

Multiple sequence alignment