Detailed information NTG0034652

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: SSUBM407_RS00775
• Genome accession: NC_012926
• Coordinates: 122709..123143 (+)
• Length: 144 a.a.
• NCBI ID: WP_011922561.1
• Uniprot ID: -
• Organism: Streptococcus suis BM407
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 117709..128143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSUBM407_RS00740 (SSUBM407_0121)	-	118458..118823 (+)	366	WP_002936568.1	DUF1033 family protein	-
SSUBM407_RS00745 (SSUBM407_0122)	-	118858..119801 (-)	944	Protein_115	S66 family peptidase	-
SSUBM407_RS00750 (SSUBM407_0123)	comYA	119887..120837 (+)	951	WP_011921718.1	competence type IV pilus ATPase ComGA	Machinery gene
SSUBM407_RS00755 (SSUBM407_0124)	comYB	120749..121786 (+)	1038	WP_011921719.1	competence type IV pilus assembly protein ComGB	Machinery gene
SSUBM407_RS00760 (SSUBM407_0125)	comYC	121788..122069 (+)	282	WP_011921720.1	competence type IV pilus major pilin ComGC	Machinery gene
SSUBM407_RS00765 (SSUBM407_0126)	comGD	122050..122457 (+)	408	WP_011921721.1	competence type IV pilus minor pilin ComGD	-
SSUBM407_RS00770 (SSUBM407_0127)	comYE	122429..122722 (+)	294	WP_011921722.1	competence type IV pilus minor pilin ComGE	Machinery gene
SSUBM407_RS00775 (SSUBM407_0128)	comGF/cglF	122709..123143 (+)	435	WP_011922561.1	competence type IV pilus minor pilin ComGF	Machinery gene
SSUBM407_RS00780 (SSUBM407_0129)	comGG	123121..123435 (+)	315	WP_228475123.1	competence type IV pilus minor pilin ComGG	-
SSUBM407_RS00785 (SSUBM407_0130)	comYH	123588..124541 (+)	954	WP_011922562.1	class I SAM-dependent methyltransferase	Machinery gene
SSUBM407_RS00790 (SSUBM407_0131)	-	124591..125778 (+)	1188	WP_012775473.1	acetate kinase	-
SSUBM407_RS00795 (SSUBM407_0132)	-	126092..126643 (+)	552	WP_012775474.1	folate family ECF transporter S component	-
SSUBM407_RS00800 (SSUBM407_0133)	-	126699..127955 (+)	1257	WP_012775475.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16491.85 Da
• Isoelectric Point: 5.9234

>NTDB_id=34652 SSUBM407_RS00775 WP_011922561.1 122709..123143(+) (comGF/cglF) [Streptococcus suis BM407]
MLKSKIPAFTLLECLVVLVILSGSLLIFEGLSKLLVQEAHYQGQTVQKEWLVFSSQLRSEWDQAELVKVENGKVYVNKGE
QALAFGKSWSDDFRKTNDRGQGYQPMLYQVDSAAISQENQLVRIDFSFKNGEERTFIYAFKEKS

Nucleotide

• Length: 435 bp

>NTDB_id=34652 SSUBM407_RS00775 WP_011922561.1 122709..123143(+) (comGF/cglF) [Streptococcus suis BM407]
TTGTTAAAAAGTAAAATTCCTGCTTTTACACTCTTGGAATGTTTGGTGGTTCTAGTCATTCTGTCAGGTAGCCTCTTGAT
TTTTGAAGGCTTATCCAAATTACTAGTCCAGGAAGCGCATTATCAAGGTCAGACCGTTCAAAAGGAATGGTTGGTCTTCT
CTAGCCAATTGCGGTCGGAGTGGGACCAGGCTGAATTGGTCAAGGTTGAAAATGGCAAGGTCTATGTCAACAAAGGTGAA
CAGGCTTTGGCCTTTGGCAAGTCATGGTCGGATGATTTTCGGAAAACAAATGATAGAGGCCAGGGTTACCAACCCATGCT
CTATCAGGTGGATAGCGCAGCCATTTCCCAAGAAAACCAGCTGGTGCGCATCGACTTTAGCTTTAAAAACGGAGAGGAGC
GAACCTTTATCTATGCTTTTAAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (37-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus pneumoniae TIGR4	52.482	97.917	0.514
comGF/cglF	Streptococcus pneumoniae Rx1	52.482	97.917	0.514
comGF/cglF	Streptococcus pneumoniae D39	52.482	97.917	0.514
comGF/cglF	Streptococcus pneumoniae R6	52.482	97.917	0.514
comGF/cglF	Streptococcus mitis NCTC 12261	52.985	93.056	0.493
comYF	Streptococcus mutans UA140	48.611	100	0.486
comYF	Streptococcus mutans UA159	47.917	100	0.479
comGF/cglF	Streptococcus mitis SK321	50	93.056	0.465
comGF	Lactococcus lactis subsp. cremoris KW2	45.39	97.917	0.444