Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EWH46_RS02615 Genome accession   NZ_CP035708
Coordinates   532701..533927 (-) Length   408 a.a.
NCBI ID   WP_149502533.1    Uniprot ID   -
Organism   Sphaerotilus sulfidivorans strain D-507     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 527701..538927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWH46_RS02575 (EWH46_02575) - 527757..528677 (-) 921 WP_149502526.1 hypothetical protein -
  EWH46_RS02580 (EWH46_02580) - 528692..528871 (-) 180 WP_149502527.1 hypothetical protein -
  EWH46_RS02585 (EWH46_02585) - 528868..529872 (-) 1005 WP_149502528.1 plasmid recombination protein -
  EWH46_RS02590 (EWH46_02590) - 529869..530138 (-) 270 WP_219340951.1 hypothetical protein -
  EWH46_RS02595 (EWH46_02595) - 530223..530990 (-) 768 WP_149502529.1 hypothetical protein -
  EWH46_RS02600 (EWH46_02600) - 531084..531497 (-) 414 WP_149502530.1 type II toxin-antitoxin system HicB family antitoxin -
  EWH46_RS02605 (EWH46_02605) - 531509..531688 (-) 180 WP_149502531.1 type II toxin-antitoxin system HicA family toxin -
  EWH46_RS02610 (EWH46_02610) - 531726..532370 (-) 645 Protein_471 tyrosine-type recombinase/integrase -
  EWH46_RS20660 - 532378..532500 (-) 123 WP_256365868.1 hypothetical protein -
  EWH46_RS02615 (EWH46_02615) pilC 532701..533927 (-) 1227 WP_149502533.1 type II secretion system F family protein Machinery gene
  EWH46_RS02620 (EWH46_02620) pilB 534016..535809 (-) 1794 WP_149502534.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EWH46_RS02625 (EWH46_02625) htpG 536135..538027 (+) 1893 WP_149502535.1 molecular chaperone HtpG -
  EWH46_RS02630 (EWH46_02630) - 538128..538568 (+) 441 WP_149502536.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44298.06 Da        Isoelectric Point: 9.9990

>NTDB_id=344012 EWH46_RS02615 WP_149502533.1 532701..533927(-) (pilC) [Sphaerotilus sulfidivorans strain D-507]
MATAAANASKKVKEFVFEWEGRDRNGKAVRGEMRAGGEAMVNASLRRQGILVSKVRKRRMSGGKAIKGKDIAIFTRQLAT
MLKSGVPLLQAFDIVARGSPNPRLTRMLTDIRSDVETGTSLSAAFRRHPLQFDALYCNLVEAGEAAGILEQLLDRLATYQ
EKTMALKQKIKSALVYPVAVLVVAFIVVAVIMIFVIPSFKQIFSSFGADLPTPTLLVIAMSEFFVEYWWLIFGSIGAGIY
FFIESWRRSPKMQMAIDRAALKLPVFGDLIHKATVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVFTLATEQIQRDVA
TGAALTSSMQAAGIFPNMVLQMASIGEESGSLDQMLGKVADFYEQEVDEAVKGLSSLMEPIIIVVLGSIIGGIVVAMYLP
IFKLGQVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=344012 EWH46_RS02615 WP_149502533.1 532701..533927(-) (pilC) [Sphaerotilus sulfidivorans strain D-507]
ATGGCCACAGCGGCTGCGAATGCATCGAAGAAGGTCAAGGAATTCGTCTTCGAATGGGAGGGCCGCGACCGCAACGGCAA
GGCGGTGCGCGGCGAGATGCGCGCCGGCGGCGAGGCGATGGTCAATGCCAGCCTGCGCCGGCAGGGCATCCTGGTCAGCA
AGGTCAGGAAGCGCCGCATGTCCGGCGGCAAGGCGATCAAGGGCAAGGACATCGCCATCTTCACCCGCCAGCTCGCGACG
ATGCTGAAATCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGTCGCGCGCGGCAGCCCGAACCCGCGCCTGACGCGCAT
GCTCACCGACATCCGCAGCGACGTGGAGACAGGCACCAGCCTGTCGGCGGCCTTCCGCCGCCACCCGCTGCAGTTCGACG
CGCTCTACTGCAATCTGGTCGAGGCCGGCGAGGCCGCCGGCATCCTGGAACAGCTCCTCGACCGCCTGGCGACCTACCAG
GAAAAGACGATGGCGCTGAAGCAGAAGATCAAGTCGGCGCTGGTCTACCCGGTGGCGGTGCTGGTGGTGGCCTTCATCGT
GGTCGCGGTGATCATGATCTTCGTGATCCCGTCGTTCAAGCAGATCTTCTCGTCCTTCGGCGCCGACCTGCCGACGCCGA
CGCTGCTCGTCATCGCGATGTCGGAGTTCTTCGTCGAGTACTGGTGGCTGATCTTCGGCAGCATCGGCGCGGGCATTTAT
TTCTTCATCGAGAGCTGGCGCCGCTCGCCGAAGATGCAGATGGCGATCGACCGGGCGGCGCTGAAGCTGCCGGTCTTCGG
CGACCTGATCCACAAGGCCACCGTCGCGCGCTGGACGCGCACCCTCTCGACGATGTTCGCCGCCGGCGTGCCGCTGGTGG
AGGCGCTCGACTCGGTCGGCGGTGCCTCGGGCAATGCGGTGTTCACCCTGGCCACCGAGCAGATCCAGCGCGATGTGGCC
ACCGGTGCGGCGCTGACCTCGTCGATGCAGGCCGCGGGCATCTTCCCGAACATGGTGCTGCAGATGGCCTCGATCGGCGA
GGAATCGGGCTCGCTCGACCAGATGCTCGGCAAGGTCGCCGACTTCTACGAGCAGGAGGTCGACGAGGCGGTCAAGGGCC
TGTCCAGCCTGATGGAGCCGATCATCATCGTCGTGCTCGGCTCGATCATCGGCGGCATCGTCGTGGCGATGTACCTGCCG
ATCTTCAAGCTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.723

99.02

0.522
  pilG Neisseria gonorrhoeae MS11

52.618

98.284

0.517
  pilG Neisseria meningitidis 44/76-A

52.12

98.284

0.512
  pilC Legionella pneumophila strain ERS1305867

51.515

97.059

0.5
  pilC Acinetobacter baylyi ADP1

49.14

99.755

0.49
  pilC Acinetobacter baumannii D1279779

49.874

97.304

0.485
  pilC Vibrio cholerae strain A1552

42.065

97.304

0.409
  pilC Vibrio campbellii strain DS40M4

40.148

99.51

0.4
  pilC Thermus thermophilus HB27

40.099

99.02

0.397

Multiple sequence alignment