Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GBG22_RS17290 Genome accession   NZ_CP045206
Coordinates   3517124..3517729 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DE17     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3512124..3522729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBG22_RS17270 (GBG22_17670) aes 3512265..3513224 (+) 960 WP_000801795.1 acetyl esterase -
  GBG22_RS17275 (GBG22_17675) hemH 3513221..3514183 (-) 963 WP_001250114.1 ferrochelatase -
  GBG22_RS17280 (GBG22_17680) adk 3514315..3514959 (-) 645 WP_039267803.1 adenylate kinase -
  GBG22_RS17285 (GBG22_17685) htpG 3515140..3517014 (-) 1875 WP_000678211.1 molecular chaperone HtpG -
  GBG22_RS17290 (GBG22_17690) recR 3517124..3517729 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GBG22_RS17295 (GBG22_17695) ybaB 3517729..3518058 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GBG22_RS17300 (GBG22_17700) dnaX 3518111..3520042 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  GBG22_RS17305 (GBG22_17705) apt 3520171..3520722 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GBG22_RS17310 (GBG22_17710) ybaN 3520875..3521252 (-) 378 WP_001188900.1 DUF454 family protein -
  GBG22_RS17315 (GBG22_17715) priC 3521322..3521849 (+) 528 WP_000844868.1 primosomal replication protein N'' -
  GBG22_RS17320 (GBG22_17720) rsmS 3521863..3522024 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=343863 GBG22_RS17290 WP_001195025.1 3517124..3517729(-) (recR) [Escherichia coli strain DE17]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=343863 GBG22_RS17290 WP_001195025.1 3517124..3517729(-) (recR) [Escherichia coli strain DE17]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment