Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EPB58_RS19015 | Genome accession | NZ_CP035693 |
| Coordinates | 1888286..1888690 (-) | Length | 134 a.a. |
| NCBI ID | WP_050936251.1 | Uniprot ID | - |
| Organism | Vibrio harveyi strain 2011V-1164 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1883286..1893690
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPB58_RS18995 | coaE | 1883787..1884401 (-) | 615 | WP_154203413.1 | dephospho-CoA kinase | - |
| EPB58_RS19000 | pilD | 1884402..1885271 (-) | 870 | WP_005446255.1 | A24 family peptidase | Machinery gene |
| EPB58_RS19005 | pilC | 1885344..1886567 (-) | 1224 | WP_154203414.1 | type II secretion system F family protein | Machinery gene |
| EPB58_RS19010 | pilB | 1886601..1888286 (-) | 1686 | WP_005446257.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EPB58_RS19015 | pilA | 1888286..1888690 (-) | 405 | WP_050936251.1 | pilin | Machinery gene |
| EPB58_RS19020 | nadC | 1888955..1889842 (-) | 888 | WP_154203415.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| EPB58_RS19025 | ampD | 1889935..1890486 (+) | 552 | WP_154203416.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EPB58_RS19030 | pdhR | 1890891..1891658 (+) | 768 | WP_005446261.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13689.67 Da Isoelectric Point: 6.9451
>NTDB_id=343798 EPB58_RS19015 WP_050936251.1 1888286..1888690(-) (pilA) [Vibrio harveyi strain 2011V-1164]
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKGEAATALGSLRALVTPAELKLQQDGELSGVVSDLGGSAS
HALGNITTTGTGVSAAVLTFTFTKGSLSGDAITLTKSTSGWVCNDGTTILDNCN
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKGEAATALGSLRALVTPAELKLQQDGELSGVVSDLGGSAS
HALGNITTTGTGVSAAVLTFTFTKGSLSGDAITLTKSTSGWVCNDGTTILDNCN
Nucleotide
Download Length: 405 bp
>NTDB_id=343798 EPB58_RS19015 WP_050936251.1 1888286..1888690(-) (pilA) [Vibrio harveyi strain 2011V-1164]
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATTGTGGTTGCAATTATTGGCGTGCT
TTCCGCAATCGCAGTTCCCGCTTATCAAAATTATGTAGCAAAAGGGGAAGCAGCTACAGCACTTGGTAGCTTAAGAGCTC
TAGTAACACCTGCAGAGTTAAAGCTACAGCAAGATGGCGAACTATCTGGTGTGGTGTCTGATTTAGGAGGTTCTGCCTCA
CATGCCTTAGGTAATATAACTACAACAGGCACAGGTGTCAGTGCTGCAGTGCTGACATTTACTTTTACGAAAGGCTCTCT
ATCTGGTGACGCGATTACTTTAACTAAGTCAACTTCAGGTTGGGTTTGTAACGACGGTACAACTATCTTAGATAACTGTA
ATTAA
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATTGTGGTTGCAATTATTGGCGTGCT
TTCCGCAATCGCAGTTCCCGCTTATCAAAATTATGTAGCAAAAGGGGAAGCAGCTACAGCACTTGGTAGCTTAAGAGCTC
TAGTAACACCTGCAGAGTTAAAGCTACAGCAAGATGGCGAACTATCTGGTGTGGTGTCTGATTTAGGAGGTTCTGCCTCA
CATGCCTTAGGTAATATAACTACAACAGGCACAGGTGTCAGTGCTGCAGTGCTGACATTTACTTTTACGAAAGGCTCTCT
ATCTGGTGACGCGATTACTTTAACTAAGTCAACTTCAGGTTGGGTTTGTAACGACGGTACAACTATCTTAGATAACTGTA
ATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
51.181 |
94.776 |
0.485 |
| pilA | Pseudomonas aeruginosa PAK |
41.304 |
100 |
0.425 |
| pilA | Vibrio cholerae strain A1552 |
38.406 |
100 |
0.396 |
| pilA | Vibrio cholerae C6706 |
38.406 |
100 |
0.396 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.406 |
100 |
0.396 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.686 |
100 |
0.396 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.129 |
92.537 |
0.381 |
| comP | Acinetobacter baylyi ADP1 |
37.405 |
97.761 |
0.366 |