Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EUZ85_RS09230 Genome accession   NZ_CP035490
Coordinates   2061649..2062869 (-) Length   406 a.a.
NCBI ID   WP_127969021.1    Uniprot ID   A0AAE5XFP4
Organism   Hahella sp. KA22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2056649..2067869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUZ85_RS31120 - 2057669..2058025 (+) 357 WP_256372771.1 PilZ domain-containing protein -
  EUZ85_RS09205 (EUZ85_09205) tsaA 2058015..2058731 (-) 717 WP_127969016.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  EUZ85_RS09210 (EUZ85_09210) - 2058741..2059610 (-) 870 WP_127969017.1 hypothetical protein -
  EUZ85_RS09215 (EUZ85_09215) yacG 2059832..2060068 (-) 237 WP_127969018.1 DNA gyrase inhibitor YacG -
  EUZ85_RS09220 (EUZ85_09220) coaE 2060058..2060684 (-) 627 WP_127969019.1 dephospho-CoA kinase -
  EUZ85_RS09225 (EUZ85_09225) pilD 2060704..2061582 (-) 879 WP_127969020.1 A24 family peptidase Machinery gene
  EUZ85_RS09230 (EUZ85_09230) pilC 2061649..2062869 (-) 1221 WP_127969021.1 type II secretion system F family protein Machinery gene
  EUZ85_RS09235 (EUZ85_09235) pilB 2062873..2064585 (-) 1713 WP_127969022.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EUZ85_RS09240 (EUZ85_09240) pilE 2064906..2065349 (+) 444 WP_127969023.1 pilin Machinery gene
  EUZ85_RS09245 (EUZ85_09245) - 2065529..2067325 (+) 1797 WP_127969024.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43964.38 Da        Isoelectric Point: 9.0582

>NTDB_id=342768 EUZ85_RS09230 WP_127969021.1 2061649..2062869(-) (pilC) [Hahella sp. KA22]
MAQAANKSSTFVWEGTDRKGNKTKGETSGANVALVKAQLRKQGINPTKVKKKAESILGKRTKTITPFDIAIFTRQMATMM
KAGVPLVQSFDIVADGLEHPSLRELVLDIKNEVAAGNSFAGALAKHPRHFDDLFCNLIDSGEKSGALETMLDRVASYLEK
TETLKKKVKKALTYPIAVIVVAIVVTGILLVKVVPQFQELFQGFGADLPAFTQVVINLSVIMQEYWFVFLISIVGSIFAF
KEAKRRSEKVSNAVDKYILKLPIVGDILYKSTVARFARVLSTTFAAGVPLVDALDSVAGATGNAVFKQAVHKIRDDVSSG
TQLQYSMKSTGVFPVMAIQLTSIGEESGALDDMLEKVADHYEAEVDDAVDNLTALMEPMIMAVLGVLVGGLIVAMYLPIF
QLGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=342768 EUZ85_RS09230 WP_127969021.1 2061649..2062869(-) (pilC) [Hahella sp. KA22]
ATGGCTCAAGCAGCAAATAAAAGCTCCACCTTCGTTTGGGAGGGCACAGATCGAAAGGGGAATAAAACAAAGGGTGAGAC
TAGCGGAGCCAATGTGGCTCTGGTTAAGGCTCAGCTTAGGAAACAGGGAATAAACCCAACCAAGGTCAAAAAGAAAGCAG
AAAGCATATTAGGAAAACGAACAAAGACGATTACTCCCTTCGATATTGCCATCTTCACCCGACAGATGGCGACAATGATG
AAAGCCGGTGTGCCACTCGTACAGTCTTTCGACATTGTAGCGGATGGTTTAGAGCACCCGTCACTGAGAGAGCTAGTTTT
AGACATAAAAAATGAAGTCGCGGCGGGGAATAGTTTTGCAGGTGCGCTGGCAAAGCATCCAAGACACTTTGATGACCTAT
TTTGCAACCTCATTGACTCAGGAGAAAAATCCGGGGCCCTTGAGACTATGCTGGACCGAGTTGCAAGCTATCTGGAAAAA
ACAGAAACTCTTAAGAAAAAAGTTAAAAAGGCCCTTACTTATCCTATTGCTGTAATAGTTGTGGCTATTGTTGTTACCGG
TATACTTCTCGTAAAGGTTGTACCCCAGTTCCAAGAGTTATTCCAAGGTTTTGGGGCAGACTTACCAGCATTTACTCAAG
TGGTCATCAATCTTTCGGTCATAATGCAGGAGTATTGGTTTGTATTCCTCATAAGTATTGTCGGATCAATTTTTGCCTTT
AAAGAAGCAAAAAGACGATCAGAAAAAGTATCAAATGCTGTAGATAAATATATTCTCAAGCTGCCTATTGTTGGGGATAT
CCTCTATAAGTCTACTGTTGCAAGATTTGCCAGGGTCTTATCTACAACTTTCGCAGCCGGTGTACCTCTGGTTGACGCGC
TAGACTCAGTAGCAGGGGCCACGGGTAATGCTGTATTCAAGCAGGCCGTCCATAAAATCCGTGATGATGTGTCCTCGGGA
ACTCAACTACAGTACAGCATGAAATCTACAGGGGTTTTCCCCGTAATGGCTATTCAGCTAACTTCGATTGGCGAAGAGTC
AGGCGCACTCGATGATATGCTTGAGAAAGTTGCAGATCATTATGAAGCGGAAGTTGATGACGCAGTCGACAACCTTACAG
CCTTAATGGAACCAATGATCATGGCCGTCCTCGGCGTGCTTGTTGGTGGGTTGATCGTCGCAATGTACCTTCCTATATTC
CAATTGGGCTCCGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

68.966

100

0.69
  pilC Acinetobacter baumannii D1279779

62.963

99.754

0.628
  pilC Acinetobacter baylyi ADP1

62.217

97.783

0.608
  pilC Legionella pneumophila strain ERS1305867

54.156

97.783

0.53
  pilG Neisseria gonorrhoeae MS11

44.913

99.261

0.446
  pilG Neisseria meningitidis 44/76-A

44.913

99.261

0.446
  pilC Vibrio cholerae strain A1552

41.162

97.537

0.401
  pilC Vibrio campbellii strain DS40M4

39.655

100

0.397

Multiple sequence alignment