Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | EQU24_RS03350 | Genome accession | NZ_CP035467 |
| Coordinates | 711421..712641 (+) | Length | 406 a.a. |
| NCBI ID | WP_017840854.1 | Uniprot ID | A0A4P9UJL3 |
| Organism | Methylotuvimicrobium buryatense strain 5GB1C | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 706421..717641
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQU24_RS03340 (EQU24_03340) | - | 706788..709598 (+) | 2811 | WP_017840856.1 | valine--tRNA ligase | - |
| EQU24_RS03345 (EQU24_03345) | pilB | 709700..711418 (+) | 1719 | WP_017840855.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EQU24_RS03350 (EQU24_03350) | pilC | 711421..712641 (+) | 1221 | WP_017840854.1 | type II secretion system F family protein | Machinery gene |
| EQU24_RS03355 (EQU24_03355) | pilD | 712797..713699 (+) | 903 | WP_017840853.1 | A24 family peptidase | Machinery gene |
| EQU24_RS03360 (EQU24_03360) | coaE | 713704..714309 (+) | 606 | WP_040575649.1 | dephospho-CoA kinase | - |
| EQU24_RS03365 (EQU24_03365) | zapD | 714313..715083 (+) | 771 | WP_026130183.1 | cell division protein ZapD | - |
| EQU24_RS03370 (EQU24_03370) | yacG | 715083..715289 (+) | 207 | WP_014147184.1 | DNA gyrase inhibitor YacG | - |
| EQU24_RS03375 (EQU24_03375) | - | 715604..716026 (-) | 423 | WP_017840850.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44836.86 Da Isoelectric Point: 7.3221
>NTDB_id=342642 EQU24_RS03350 WP_017840854.1 711421..712641(+) (pilC) [Methylotuvimicrobium buryatense strain 5GB1C]
MSEQVEQIDFIWDGKDKSGKRTKGEIAAKSETIARSELRKMGVRVISVKKKPKPLFGARVKAITPGDIAIFSRQLATMLE
AGVPLVQSFDIIGRGHDNPSMQKMLLDIKADIEGGDTLAEALKRRPVYFDELFCNLVESGEQAGVLETLLDKIATYKEKT
ESLKKKIKKALTYPIAVLVVAFVVTAILLIFVVPVFEELFQSFGADLPAFTKMVISLSEWMQAWWWIMVASIVAIVYTFS
YFHKRSRPFNHFLDRTLLKIPVVGLILNKSAIARFSRTLSTMSAAGVPLVEALESVAGACGNIIYADAVLKMREDVATGQ
RLQFAMQQTVLFPHMVIQMVAIGEESGSIDTMLSKVADFYEEEVDNLVDNLSSLMEPLIMSVLGVLVGGLIVAMYLPIFK
MGAAVG
MSEQVEQIDFIWDGKDKSGKRTKGEIAAKSETIARSELRKMGVRVISVKKKPKPLFGARVKAITPGDIAIFSRQLATMLE
AGVPLVQSFDIIGRGHDNPSMQKMLLDIKADIEGGDTLAEALKRRPVYFDELFCNLVESGEQAGVLETLLDKIATYKEKT
ESLKKKIKKALTYPIAVLVVAFVVTAILLIFVVPVFEELFQSFGADLPAFTKMVISLSEWMQAWWWIMVASIVAIVYTFS
YFHKRSRPFNHFLDRTLLKIPVVGLILNKSAIARFSRTLSTMSAAGVPLVEALESVAGACGNIIYADAVLKMREDVATGQ
RLQFAMQQTVLFPHMVIQMVAIGEESGSIDTMLSKVADFYEEEVDNLVDNLSSLMEPLIMSVLGVLVGGLIVAMYLPIFK
MGAAVG
Nucleotide
Download Length: 1221 bp
>NTDB_id=342642 EQU24_RS03350 WP_017840854.1 711421..712641(+) (pilC) [Methylotuvimicrobium buryatense strain 5GB1C]
ATGTCTGAACAAGTCGAACAAATTGATTTCATCTGGGATGGCAAAGATAAAAGCGGGAAGCGGACCAAAGGGGAAATCGC
CGCGAAATCCGAAACTATTGCTCGGAGCGAATTGCGCAAAATGGGCGTGCGCGTCATTAGTGTCAAGAAAAAACCCAAGC
CCTTATTCGGCGCCCGTGTCAAAGCCATTACGCCAGGCGATATCGCTATTTTCAGCCGGCAACTCGCGACGATGCTCGAA
GCCGGCGTGCCGTTGGTGCAATCGTTCGATATCATCGGTAGAGGGCATGACAACCCGAGCATGCAAAAGATGTTGCTAGA
CATCAAGGCAGATATTGAAGGCGGCGATACCTTGGCCGAAGCGCTGAAAAGAAGACCGGTCTATTTCGATGAGCTGTTTT
GTAATCTGGTCGAATCGGGCGAGCAGGCGGGGGTGCTTGAAACATTGCTCGATAAAATAGCGACCTATAAAGAAAAAACC
GAATCGCTCAAGAAAAAAATCAAAAAAGCGTTGACCTATCCGATTGCGGTACTGGTCGTCGCGTTTGTCGTCACCGCCAT
TTTGCTGATTTTCGTCGTACCGGTGTTCGAAGAGTTGTTTCAGAGCTTCGGAGCCGATCTTCCCGCTTTCACGAAGATGG
TTATTAGTCTTTCCGAATGGATGCAGGCATGGTGGTGGATAATGGTCGCTAGTATCGTAGCGATTGTTTATACGTTTAGT
TATTTCCATAAACGATCTAGACCGTTCAATCATTTTCTGGACAGAACCTTACTGAAAATACCGGTCGTTGGGTTAATCTT
GAATAAATCGGCCATCGCGCGTTTCTCCAGAACGCTGTCGACGATGTCTGCCGCTGGCGTTCCGTTAGTTGAAGCGCTGG
AGTCTGTTGCGGGGGCTTGCGGAAACATCATTTACGCCGATGCCGTTTTGAAAATGCGCGAAGATGTCGCTACGGGTCAG
CGTCTGCAATTTGCTATGCAGCAGACCGTTCTATTTCCGCACATGGTGATTCAAATGGTTGCAATCGGTGAGGAGTCCGG
TTCGATCGATACGATGTTGAGCAAGGTTGCCGATTTTTACGAAGAAGAGGTCGACAATTTGGTAGACAATCTTAGCAGTT
TGATGGAACCGTTGATCATGTCGGTGCTGGGTGTATTGGTTGGCGGCTTGATCGTCGCGATGTATCTGCCGATCTTTAAA
ATGGGTGCGGCAGTGGGATAA
ATGTCTGAACAAGTCGAACAAATTGATTTCATCTGGGATGGCAAAGATAAAAGCGGGAAGCGGACCAAAGGGGAAATCGC
CGCGAAATCCGAAACTATTGCTCGGAGCGAATTGCGCAAAATGGGCGTGCGCGTCATTAGTGTCAAGAAAAAACCCAAGC
CCTTATTCGGCGCCCGTGTCAAAGCCATTACGCCAGGCGATATCGCTATTTTCAGCCGGCAACTCGCGACGATGCTCGAA
GCCGGCGTGCCGTTGGTGCAATCGTTCGATATCATCGGTAGAGGGCATGACAACCCGAGCATGCAAAAGATGTTGCTAGA
CATCAAGGCAGATATTGAAGGCGGCGATACCTTGGCCGAAGCGCTGAAAAGAAGACCGGTCTATTTCGATGAGCTGTTTT
GTAATCTGGTCGAATCGGGCGAGCAGGCGGGGGTGCTTGAAACATTGCTCGATAAAATAGCGACCTATAAAGAAAAAACC
GAATCGCTCAAGAAAAAAATCAAAAAAGCGTTGACCTATCCGATTGCGGTACTGGTCGTCGCGTTTGTCGTCACCGCCAT
TTTGCTGATTTTCGTCGTACCGGTGTTCGAAGAGTTGTTTCAGAGCTTCGGAGCCGATCTTCCCGCTTTCACGAAGATGG
TTATTAGTCTTTCCGAATGGATGCAGGCATGGTGGTGGATAATGGTCGCTAGTATCGTAGCGATTGTTTATACGTTTAGT
TATTTCCATAAACGATCTAGACCGTTCAATCATTTTCTGGACAGAACCTTACTGAAAATACCGGTCGTTGGGTTAATCTT
GAATAAATCGGCCATCGCGCGTTTCTCCAGAACGCTGTCGACGATGTCTGCCGCTGGCGTTCCGTTAGTTGAAGCGCTGG
AGTCTGTTGCGGGGGCTTGCGGAAACATCATTTACGCCGATGCCGTTTTGAAAATGCGCGAAGATGTCGCTACGGGTCAG
CGTCTGCAATTTGCTATGCAGCAGACCGTTCTATTTCCGCACATGGTGATTCAAATGGTTGCAATCGGTGAGGAGTCCGG
TTCGATCGATACGATGTTGAGCAAGGTTGCCGATTTTTACGAAGAAGAGGTCGACAATTTGGTAGACAATCTTAGCAGTT
TGATGGAACCGTTGATCATGTCGGTGCTGGGTGTATTGGTTGGCGGCTTGATCGTCGCGATGTATCTGCCGATCTTTAAA
ATGGGTGCGGCAGTGGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
61.307 |
98.03 |
0.601 |
| pilC | Pseudomonas stutzeri DSM 10701 |
59.091 |
97.537 |
0.576 |
| pilC | Acinetobacter baumannii D1279779 |
58.186 |
97.783 |
0.569 |
| pilC | Acinetobacter baylyi ADP1 |
55.919 |
97.783 |
0.547 |
| pilG | Neisseria gonorrhoeae MS11 |
45.771 |
99.015 |
0.453 |
| pilG | Neisseria meningitidis 44/76-A |
45.75 |
98.522 |
0.451 |
| pilC | Vibrio cholerae strain A1552 |
41.457 |
98.03 |
0.406 |
| pilC | Vibrio campbellii strain DS40M4 |
40.955 |
98.03 |
0.401 |
| pilC | Thermus thermophilus HB27 |
37.94 |
98.03 |
0.372 |