Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ETK49_RS13230 Genome accession   NZ_CP035405
Coordinates   2530560..2531360 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103608     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2525560..2536360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK49_RS13195 (ETK49_13195) - 2526752..2527006 (+) 255 WP_003183348.1 DUF2627 domain-containing protein -
  ETK49_RS13200 (ETK49_13200) - 2527057..2527782 (-) 726 WP_003183351.1 glycerophosphodiester phosphodiesterase -
  ETK49_RS13205 (ETK49_13205) - 2527916..2528491 (-) 576 WP_202604333.1 N-acetylmuramoyl-L-alanine amidase -
  ETK49_RS13210 (ETK49_13210) - 2528572..2528892 (-) 321 WP_003183355.1 hypothetical protein -
  ETK49_RS22835 - 2528891..2529223 (+) 333 WP_223307051.1 hypothetical protein -
  ETK49_RS13220 (ETK49_13220) - 2529378..2529761 (-) 384 WP_003183357.1 serine acetyltransferase -
  ETK49_RS13225 (ETK49_13225) - 2529892..2530095 (-) 204 WP_231082760.1 LCI fold-containing protein -
  ETK49_RS13230 (ETK49_13230) spo0A 2530560..2531360 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  ETK49_RS13235 (ETK49_13235) spoIVB 2531650..2532933 (-) 1284 WP_011198109.1 SpoIVB peptidase -
  ETK49_RS13240 (ETK49_13240) recN 2533116..2534846 (-) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  ETK49_RS13245 (ETK49_13245) argR 2534878..2535327 (-) 450 WP_003183369.1 transcriptional regulator ArgR -
  ETK49_RS13250 (ETK49_13250) - 2535493..2536338 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=340485 ETK49_RS13230 WP_003183361.1 2530560..2531360(-) (spo0A) [Bacillus licheniformis strain SRCM103608]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=340485 ETK49_RS13230 WP_003183361.1 2530560..2531360(-) (spo0A) [Bacillus licheniformis strain SRCM103608]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAGAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTTG
TGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGCCAGGAAGACGTGACCAAAAAAGCTGTAGATTTAGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAATTTAGTCGGACATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATGGTATATAACGACATCGA
ACTGCTCGGCAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACCAATAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment