Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | EO087_RS15020 | Genome accession | NZ_CP035300 |
| Coordinates | 3272524..3273792 (-) | Length | 422 a.a. |
| NCBI ID | WP_128899571.1 | Uniprot ID | - |
| Organism | Dyella sp. M7H15-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3267524..3278792
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EO087_RS15005 (EO087_15005) | coaE | 3269215..3269865 (-) | 651 | WP_128899568.1 | dephospho-CoA kinase | - |
| EO087_RS15010 (EO087_15010) | - | 3269868..3271580 (-) | 1713 | WP_128899569.1 | phosphoethanolamine transferase | - |
| EO087_RS15015 (EO087_15015) | - | 3271591..3272448 (-) | 858 | WP_128899570.1 | A24 family peptidase | - |
| EO087_RS15020 (EO087_15020) | pilC | 3272524..3273792 (-) | 1269 | WP_128899571.1 | type II secretion system F family protein | Machinery gene |
| EO087_RS15025 (EO087_15025) | pilB | 3273942..3275666 (-) | 1725 | WP_128899572.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EO087_RS15030 (EO087_15030) | - | 3275934..3276788 (+) | 855 | WP_128899573.1 | glycosyltransferase family 2 protein | - |
| EO087_RS15035 (EO087_15035) | - | 3276793..3277908 (+) | 1116 | WP_128899574.1 | UDP-N-acetylglucosamine 2-epimerase | - |
Sequence
Protein
Download Length: 422 a.a. Molecular weight: 46135.52 Da Isoelectric Point: 10.3074
>NTDB_id=339063 EO087_RS15020 WP_128899571.1 3272524..3273792(-) (pilC) [Dyella sp. M7H15-1]
MATVTAATKNTRQQGAQRAQISQMPVYEWVALDKRGKRMKGSMPAKNASLVKAELRRQGMNPQTVKERAKPLFGSTGSVV
KPRDVAIFSRQIATMMASGVPMVQAFDIIADGQKNPRFKNMLIDVKQDIEGGSTLNEALGRYPVQFDALYRNLVRAGESA
GVLDTILETVATYKEKTESIKGKIKKALFYPIMVMMVAVAVIMIMLLFVVPIFAKTFKDAGAQLPTPTQLLVTMSQFMQQ
YWWLVLGSVAGGIVAIIMAKKRSVKFAHFLDRMTLKIPVIGNIFRQSAIARFSRTLGVTFRAGVPLVEAMDAVAGATGSS
VYAEAVHQMRDDVAVGHQLQLAMRQTGLFPNMVTQMVAIGEESGALDHMLFKCAEFYEEEVGNAVDSLASLLEPLMMVIL
GVVVGGIVIALYLPIFKLAGTF
MATVTAATKNTRQQGAQRAQISQMPVYEWVALDKRGKRMKGSMPAKNASLVKAELRRQGMNPQTVKERAKPLFGSTGSVV
KPRDVAIFSRQIATMMASGVPMVQAFDIIADGQKNPRFKNMLIDVKQDIEGGSTLNEALGRYPVQFDALYRNLVRAGESA
GVLDTILETVATYKEKTESIKGKIKKALFYPIMVMMVAVAVIMIMLLFVVPIFAKTFKDAGAQLPTPTQLLVTMSQFMQQ
YWWLVLGSVAGGIVAIIMAKKRSVKFAHFLDRMTLKIPVIGNIFRQSAIARFSRTLGVTFRAGVPLVEAMDAVAGATGSS
VYAEAVHQMRDDVAVGHQLQLAMRQTGLFPNMVTQMVAIGEESGALDHMLFKCAEFYEEEVGNAVDSLASLLEPLMMVIL
GVVVGGIVIALYLPIFKLAGTF
Nucleotide
Download Length: 1269 bp
>NTDB_id=339063 EO087_RS15020 WP_128899571.1 3272524..3273792(-) (pilC) [Dyella sp. M7H15-1]
ATGGCCACGGTTACCGCTGCCACGAAAAATACCCGGCAACAGGGTGCTCAACGCGCCCAGATAAGCCAGATGCCCGTCTA
TGAATGGGTGGCGCTGGATAAGCGCGGCAAACGGATGAAAGGTTCGATGCCAGCGAAAAATGCCTCGCTGGTCAAGGCCG
AGCTACGCCGTCAAGGCATGAACCCGCAAACGGTGAAGGAGCGCGCCAAGCCGCTGTTCGGCTCTACCGGCAGCGTGGTC
AAACCCAGGGATGTAGCAATTTTCAGCCGTCAGATCGCCACGATGATGGCGTCCGGCGTCCCCATGGTGCAGGCCTTCGA
CATCATTGCTGATGGCCAGAAGAATCCTCGCTTCAAGAACATGCTGATCGATGTAAAACAGGACATTGAGGGCGGCTCGA
CGCTAAATGAAGCGCTGGGTAGATACCCGGTGCAATTTGACGCGTTATACCGAAACCTGGTCCGCGCTGGCGAATCGGCG
GGTGTGCTTGACACGATTCTGGAAACTGTCGCTACTTACAAAGAGAAAACCGAAAGCATCAAAGGCAAGATCAAGAAGGC
GCTCTTCTATCCGATCATGGTGATGATGGTCGCCGTTGCCGTCATCATGATCATGTTGCTGTTCGTGGTGCCTATATTTG
CCAAGACCTTCAAGGACGCTGGCGCGCAACTGCCGACACCCACTCAACTGCTAGTGACAATGTCACAGTTCATGCAACAG
TACTGGTGGCTTGTTCTCGGCAGTGTTGCCGGCGGCATCGTGGCTATCATCATGGCAAAGAAGCGATCAGTGAAATTTGC
CCATTTCCTCGATCGCATGACCCTAAAAATACCGGTGATCGGCAATATTTTTCGCCAGTCAGCTATTGCACGTTTTTCGC
GTACCTTGGGCGTCACCTTCCGCGCAGGCGTACCCCTGGTTGAAGCTATGGACGCTGTCGCCGGCGCGACTGGCAGCAGT
GTTTACGCCGAGGCCGTGCACCAAATGCGCGATGACGTAGCTGTAGGTCACCAACTGCAATTGGCCATGCGACAAACTGG
ACTCTTTCCAAACATGGTCACGCAGATGGTCGCGATCGGCGAAGAATCGGGCGCATTGGACCATATGTTGTTCAAGTGTG
CTGAGTTTTATGAAGAAGAAGTTGGCAATGCCGTCGACTCCTTAGCCTCGTTGCTCGAACCTTTAATGATGGTGATCCTG
GGTGTGGTGGTCGGCGGCATCGTGATTGCACTCTACCTCCCCATCTTCAAACTCGCCGGCACGTTCTAA
ATGGCCACGGTTACCGCTGCCACGAAAAATACCCGGCAACAGGGTGCTCAACGCGCCCAGATAAGCCAGATGCCCGTCTA
TGAATGGGTGGCGCTGGATAAGCGCGGCAAACGGATGAAAGGTTCGATGCCAGCGAAAAATGCCTCGCTGGTCAAGGCCG
AGCTACGCCGTCAAGGCATGAACCCGCAAACGGTGAAGGAGCGCGCCAAGCCGCTGTTCGGCTCTACCGGCAGCGTGGTC
AAACCCAGGGATGTAGCAATTTTCAGCCGTCAGATCGCCACGATGATGGCGTCCGGCGTCCCCATGGTGCAGGCCTTCGA
CATCATTGCTGATGGCCAGAAGAATCCTCGCTTCAAGAACATGCTGATCGATGTAAAACAGGACATTGAGGGCGGCTCGA
CGCTAAATGAAGCGCTGGGTAGATACCCGGTGCAATTTGACGCGTTATACCGAAACCTGGTCCGCGCTGGCGAATCGGCG
GGTGTGCTTGACACGATTCTGGAAACTGTCGCTACTTACAAAGAGAAAACCGAAAGCATCAAAGGCAAGATCAAGAAGGC
GCTCTTCTATCCGATCATGGTGATGATGGTCGCCGTTGCCGTCATCATGATCATGTTGCTGTTCGTGGTGCCTATATTTG
CCAAGACCTTCAAGGACGCTGGCGCGCAACTGCCGACACCCACTCAACTGCTAGTGACAATGTCACAGTTCATGCAACAG
TACTGGTGGCTTGTTCTCGGCAGTGTTGCCGGCGGCATCGTGGCTATCATCATGGCAAAGAAGCGATCAGTGAAATTTGC
CCATTTCCTCGATCGCATGACCCTAAAAATACCGGTGATCGGCAATATTTTTCGCCAGTCAGCTATTGCACGTTTTTCGC
GTACCTTGGGCGTCACCTTCCGCGCAGGCGTACCCCTGGTTGAAGCTATGGACGCTGTCGCCGGCGCGACTGGCAGCAGT
GTTTACGCCGAGGCCGTGCACCAAATGCGCGATGACGTAGCTGTAGGTCACCAACTGCAATTGGCCATGCGACAAACTGG
ACTCTTTCCAAACATGGTCACGCAGATGGTCGCGATCGGCGAAGAATCGGGCGCATTGGACCATATGTTGTTCAAGTGTG
CTGAGTTTTATGAAGAAGAAGTTGGCAATGCCGTCGACTCCTTAGCCTCGTTGCTCGAACCTTTAATGATGGTGATCCTG
GGTGTGGTGGTCGGCGGCATCGTGATTGCACTCTACCTCCCCATCTTCAAACTCGCCGGCACGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
53.316 |
92.891 |
0.495 |
| pilC | Acinetobacter baumannii D1279779 |
49.132 |
95.498 |
0.469 |
| pilC | Pseudomonas stutzeri DSM 10701 |
50.382 |
93.128 |
0.469 |
| pilC | Acinetobacter baylyi ADP1 |
48.515 |
95.735 |
0.464 |
| pilC | Thermus thermophilus HB27 |
38.915 |
100 |
0.391 |
| pilG | Neisseria gonorrhoeae MS11 |
41.885 |
90.521 |
0.379 |
| pilG | Neisseria meningitidis 44/76-A |
41.623 |
90.521 |
0.377 |
| pilC | Vibrio cholerae strain A1552 |
39.796 |
92.891 |
0.37 |
| pilC | Vibrio campbellii strain DS40M4 |
38.636 |
93.839 |
0.363 |