Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EQ029_RS06420 Genome accession   NZ_CP035291
Coordinates   1325670..1325990 (+) Length   106 a.a.
NCBI ID   WP_057504819.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain ATCC 29970     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320670..1330990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQ029_RS06390 (EQ029_06405) - 1321457..1321660 (+) 204 WP_011275664.1 YqgQ family protein -
  EQ029_RS06395 (EQ029_06410) - 1321657..1322643 (+) 987 WP_037558191.1 ROK family glucokinase -
  EQ029_RS06400 (EQ029_06415) - 1322643..1322966 (+) 324 WP_011275666.1 MTH1187 family thiamine-binding protein -
  EQ029_RS06405 (EQ029_06420) - 1322968..1323594 (+) 627 WP_011275667.1 MBL fold metallo-hydrolase -
  EQ029_RS06410 (EQ029_06425) comGA 1323646..1324620 (+) 975 WP_011275668.1 competence type IV pilus ATPase ComGA Machinery gene
  EQ029_RS06415 (EQ029_06430) comGB 1324592..1325656 (+) 1065 WP_037558195.1 competence type IV pilus assembly protein ComGB -
  EQ029_RS06420 (EQ029_06435) comGC 1325670..1325990 (+) 321 WP_057504819.1 competence type IV pilus major pilin ComGC Machinery gene
  EQ029_RS06425 (EQ029_06440) comGD 1326055..1326423 (+) 369 WP_123955564.1 competence type IV pilus minor pilin ComGD -
  EQ029_RS06430 (EQ029_06445) - 1326404..1326703 (+) 300 WP_037558199.1 hypothetical protein -
  EQ029_RS06445 (EQ029_06460) - 1327272..1327790 (+) 519 WP_037558203.1 shikimate kinase -
  EQ029_RS06450 (EQ029_06465) gcvT 1327979..1329070 (+) 1092 WP_011275675.1 glycine cleavage system aminomethyltransferase GcvT -
  EQ029_RS06455 (EQ029_06470) gcvPA 1329087..1330439 (+) 1353 WP_037558205.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11853.96 Da        Isoelectric Point: 9.2003

>NTDB_id=338989 EQ029_RS06420 WP_057504819.1 1325670..1325990(+) (comGC) [Staphylococcus haemolyticus strain ATCC 29970]
MKNHFKNLKKLKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHIQSTGCEAQVKMINSQIEAYTLKHNRTPSNINDLIND
GLIKEEQKQCRSGETITISNGEAIAN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=338989 EQ029_RS06420 WP_057504819.1 1325670..1325990(+) (comGC) [Staphylococcus haemolyticus strain ATCC 29970]
ATGAAGAATCACTTTAAAAATTTAAAAAAGTTAAAAGCCTTTACTCTAATAGAAATGTTATTAGTATTACTAATTATCAG
CGTATTACTAATATTAATTATTCCAAACATTGCAAAACAAACAGCTCATATCCAGTCCACAGGTTGTGAAGCTCAAGTCA
AAATGATAAATAGTCAAATAGAAGCATATACATTAAAACATAATCGAACACCTTCTAATATAAATGATCTTATAAATGAT
GGCCTTATAAAAGAAGAACAAAAACAATGCAGATCGGGAGAAACAATTACAATATCTAATGGTGAGGCTATTGCGAACTA
G

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

84.314

96.226

0.811
  comGC Staphylococcus aureus N315

84.314

96.226

0.811
  comYC Streptococcus gordonii str. Challis substr. CH1

42.991

100

0.434
  comGC/cglC Streptococcus mitis SK321

50.617

76.415

0.387
  comGC/cglC Streptococcus mitis NCTC 12261

50.617

76.415

0.387
  comGC/cglC Streptococcus pneumoniae R6

49.383

76.415

0.377
  comGC/cglC Streptococcus pneumoniae TIGR4

49.383

76.415

0.377
  comGC/cglC Streptococcus pneumoniae Rx1

49.383

76.415

0.377
  comGC/cglC Streptococcus pneumoniae D39

49.383

76.415

0.377
  comYC Streptococcus mutans UA140

50

73.585

0.368
  comYC Streptococcus mutans UA159

50

73.585

0.368

Multiple sequence alignment