Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   F0316_RS09015 Genome accession   NZ_CP043554
Coordinates   1939450..1941480 (-) Length   676 a.a.
NCBI ID   WP_149560429.1    Uniprot ID   -
Organism   Vibrio cholerae strain RFB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1934450..1946480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS08985 (F0316_08985) moaB 1934560..1935072 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  F0316_RS08990 (F0316_08990) moaA 1935132..1936121 (-) 990 WP_172626003.1 GTP 3',8-cyclase MoaA -
  F0316_RS08995 (F0316_08995) - 1936428..1937318 (+) 891 WP_000061070.1 YvcK family protein -
  F0316_RS09000 (F0316_09000) luxU 1937307..1937648 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  F0316_RS09005 (F0316_09005) luxO 1937652..1939019 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  F0316_RS09015 (F0316_09015) uvrB 1939450..1941480 (-) 2031 WP_149560429.1 excinuclease ABC subunit UvrB Machinery gene
  F0316_RS09025 (F0316_09025) rsxA 1942361..1942942 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  F0316_RS09030 (F0316_09030) rsxB 1942942..1943529 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -
  F0316_RS09035 (F0316_09035) rsxC 1943538..1946093 (+) 2556 WP_172626004.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 76655.45 Da        Isoelectric Point: 5.0342

>NTDB_id=338388 F0316_RS09015 WP_149560429.1 1939450..1941480(-) (uvrB) [Vibrio cholerae strain RFB16]
MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLH
LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITLRDLA
RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEY
ELTKSGGEVAEQVVRPTGLLDPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITK
SMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEIS
KLEAAMYQHAQNLEFELAAQKRDEIHQLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=338388 F0316_RS09015 WP_149560429.1 1939450..1941480(-) (uvrB) [Vibrio cholerae strain RFB16]
ATGAGCAAAGCATTTGAATTGGTTTCAGACTATCAACCTGCTGGTGATCAGCCTACCGCGATTAAGCAATTGCTGGAGGG
GTTGGAAGCGGGCTTGGCTCATCAAACTCTGCTTGGGGTAACGGGGTCGGGTAAAACCTTTACGTTAGCGAATGTGATTG
CCACCGCGCAGCGTCCCACCATTATACTTGCGCCTAATAAGACACTGGCGGCTCAATTGTACGGCGAAATGAAAGCCTTT
TTTCCCAACAATGCGGTGGAGTATTTCGTTTCTTACTACGACTACTATCAACCAGAAGCCTATGTGCCGACCACGGATAC
TTTTATTGAAAAAGACGCGTCCGTGAACGCTCATATTGAACAGATGCGCTTATCGGCCACTAAAGCCTTACTTGAGCGCA
AAGATGCGGTGATTGTCGCTTCGGTTTCTGCCATCTATGGTCTGGGCGATCCGGACTCTTATCTAAAAATGATGCTCCAT
TTGCGTCGTGGTGATGTGATTAACCAACGCGACATGTTGCGTCGTTTGGCGGAGCTGCAATATTCACGCAATGATATGGC
ATTTGAGCGCGGTCAGTTCCGGGTACGCGGAGAAGTGATTGATATTTTCCCTGCCGAATCGGATCAAGAAGCTGTTCGAG
TGGAAATGTTTGATGATGAAGTCGAATGCATCAGCTTATTTGACCCGCTGACGGGCGTGATTACGTTACGCGATTTAGCT
CGGTTTACGATTTACCCCAAAACTCACTATGTCACCCCACGCGAGCGCATTCTTGAGGCGATAGAGCAGATTAAGAGCGA
GTTACAGGTCCGTCGCCAATATTTGCTGGATAACAATAAATTGCTGGAAGAGCAGCGGATTTCTCAGCGAACTCAGTTTG
ATATTGAGATGATGAACGAATTGGGATTCTGCTCAGGGATCGAAAACTACTCACGTTACCTAAGTGGTCGTGCAGAAGGC
GAGCCGCCTCCAACGCTCTTTGATTACTTGCCTCACGATGGCTTGCTGATCATCGATGAATCACACGTCACCGTGCCGCA
AATTGGCGCGATGTTTAAAGGCGATCGTTCGCGAAAAGAAACGCTGGTGGAGTTCGGTTTTCGCCTGCCGTCAGCTTTAG
ATAACCGCCCACTTAAGTTTGATGAATTTGAAGCATTAGCACCGCAAACCATCTTTGTGTCAGCAACACCAAGTGAATAT
GAGCTCACTAAATCGGGTGGTGAAGTGGCCGAGCAGGTGGTGCGTCCAACCGGTTTGTTAGACCCGATCATTGAAGTACG
TCCGGTCGCCACTCAGGTGGATGATCTGCTTTCTGAAGCGCGCATTCGCGCGGCCAATGATGAGCGGATTTTGGTGACTA
CCTTAACCAAACGCATGGCCGAGGATTTAACCGAATATCTGCATGAGCATGGTGTGAAAGTTCGCTATTTACACTCGGAC
ATTGATACCGTCGAACGGGTAGAAATTATTCGTGATTTACGATTAGGCGTATTTGATGTGTTGGTGGGGATCAACTTGCT
ACGTGAAGGTCTGGATATGCCAGAAGTCGCTTTAGTGGCGATTTTGGATGCTGATAAAGAAGGTTTTTTGCGTTCCGAGC
GTTCACTCATTCAGACCATGGGTCGTGCAGCACGTAACGTGAATGGTAAAGCAATTTTGTATGCCGACTCGATCACCAAA
TCCATGCGTAAAGCGATCGATGAAACCGAGCGTCGCCGTGAGAAGCAGCTGGCTTATAATGAGCAGCGCGGTATCACGCC
GCAGCCTTTAAAACGCAGCGTTAAAGACATCATGGAGCTGGGCGATATTGCGAAATCGCGTAAACAGAAGAACAGCAAAG
TGGTGCCATTGGCGAAAGTAGCTGAAGAATCGGCGGCTTACCAAGTGTTGACTCCTCAGCAGCTTGAAAAAGAGATCAGT
AAATTAGAAGCCGCAATGTATCAGCATGCACAGAACTTAGAGTTTGAGTTAGCGGCGCAAAAACGTGATGAAATTCATCA
GTTGCGTCAGCAGTTTATCGCCAATAGTTAG

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(159-250)

UvrB/uvrC motif (UVR)

(636-671)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-594)

Type III restriction enzyme, res subunit (ResIII)

(16-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.69

97.485

0.543
  uvrB Streptococcus pneumoniae R6

55.69

97.485

0.543
  uvrB Streptococcus pneumoniae D39

55.69

97.485

0.543

Multiple sequence alignment