Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LHK_RS14435 Genome accession   NC_012559
Coordinates   3058962..3060023 (-) Length   353 a.a.
NCBI ID   WP_228369895.1    Uniprot ID   -
Organism   Laribacter hongkongensis HLHK9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3053962..3065023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHK_RS14410 (LHK_03139) - 3054252..3054593 (-) 342 WP_012698580.1 AzlD domain-containing protein -
  LHK_RS14415 (LHK_03140) - 3054590..3055315 (-) 726 WP_012698581.1 AzlC family ABC transporter permease -
  LHK_RS16735 (LHK_03142) - 3055743..3055940 (+) 198 WP_012698583.1 hypothetical protein -
  LHK_RS14425 (LHK_03143) topA 3056002..3058329 (-) 2328 WP_012698584.1 type I DNA topoisomerase -
  LHK_RS14430 (LHK_03144) - 3058461..3058916 (-) 456 WP_012698585.1 DUF494 domain-containing protein -
  LHK_RS14435 (LHK_03146) dprA 3058962..3060023 (-) 1062 WP_228369895.1 DNA-processing protein DprA Machinery gene
  LHK_RS14440 (LHK_03147) def 3060215..3060718 (+) 504 WP_012698588.1 peptide deformylase -
  LHK_RS14445 (LHK_03149) fmt 3060805..3061727 (+) 923 Protein_2957 methionyl-tRNA formyltransferase -
  LHK_RS14450 (LHK_03150) - 3062122..3062880 (-) 759 WP_012698591.1 TlyA family RNA methyltransferase -
  LHK_RS14455 (LHK_03151) - 3062961..3063188 (-) 228 WP_012698592.1 hypothetical protein -
  LHK_RS14460 (LHK_03152) - 3063325..3064389 (+) 1065 WP_012698593.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 36677.29 Da        Isoelectric Point: 5.2232

>NTDB_id=33760 LHK_RS14435 WP_228369895.1 3058962..3060023(-) (dprA) [Laribacter hongkongensis HLHK9]
MHLAHIPGLGAVRLNRLLQAFGSAEAVLEAGTAGLTGIVPARLAEAIVQTDTRREQEAVAAWLARGEGRDLLTLADADYP
PALAELTDPPPLLYLHGRRELLQQPMLAVVGSRQATPQGRRDATRFARALAGSGLTVVSGLAAGIDAAAHEGALAAGGGT
VGVIGTGIDRIYPAANRDLAYRMAAEGLLVSELPLGSPPLAAHFPRRNRVIAGLSLGCLVVEADLESGSLITARLALEAG
REVFAMPGSIHSPVAKGCHALIREGAKLTECLEDILSELPPVLSPPVEETRSQAVPQAIEDAVLAALGAEILTLDSLVER
TGLTVDTLLGMLLAHELAGQVVGLPGGRYQRML

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=33760 LHK_RS14435 WP_228369895.1 3058962..3060023(-) (dprA) [Laribacter hongkongensis HLHK9]
TTGCATCTGGCCCACATTCCCGGCCTGGGTGCCGTTCGCCTCAACCGCTTGTTGCAGGCATTCGGCTCGGCCGAAGCGGT
ACTGGAGGCCGGTACGGCCGGGCTGACCGGCATCGTGCCGGCCAGACTGGCCGAGGCCATCGTGCAGACCGACACCCGGC
GCGAACAGGAGGCCGTGGCAGCATGGCTGGCGCGCGGCGAAGGGCGCGACCTGCTGACGCTGGCCGATGCCGACTATCCG
CCGGCGCTGGCCGAGCTGACCGACCCGCCACCGCTGCTGTACTTGCACGGCCGGCGCGAGCTGTTGCAACAGCCGATGCT
GGCCGTGGTGGGCAGCCGGCAGGCAACGCCGCAGGGACGACGGGATGCCACCCGCTTTGCCCGGGCACTGGCCGGATCGG
GGCTGACCGTGGTCAGCGGCCTGGCGGCCGGCATTGATGCGGCTGCGCACGAAGGTGCACTGGCAGCCGGGGGCGGGACC
GTCGGCGTCATCGGCACCGGCATCGACCGCATTTATCCGGCAGCCAATCGTGATCTGGCGTACCGGATGGCGGCCGAAGG
GTTGCTGGTCAGCGAGCTGCCGCTGGGCAGTCCGCCGCTGGCCGCGCATTTTCCGCGGCGCAACCGGGTGATTGCCGGGC
TGAGCCTGGGATGCCTGGTGGTGGAAGCCGACCTCGAAAGCGGCTCGCTCATCACCGCCCGGCTGGCTCTGGAGGCCGGG
CGTGAGGTGTTTGCCATGCCGGGGTCGATCCACTCGCCGGTGGCCAAGGGCTGCCATGCCCTGATCCGGGAAGGTGCCAA
GCTGACCGAGTGCCTGGAGGACATCCTGTCCGAGCTGCCGCCTGTGCTGTCCCCACCGGTGGAGGAGACCCGGTCGCAGG
CTGTGCCGCAGGCCATCGAGGATGCGGTACTGGCTGCGCTGGGAGCGGAAATCCTGACGCTGGACAGCCTTGTCGAGCGT
ACGGGCTTGACGGTCGACACCCTTTTGGGGATGCTGCTCGCTCACGAGCTTGCCGGACAGGTTGTGGGACTGCCGGGCGG
GCGTTATCAGCGCATGCTGTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(290-347)

DNA recombination-mediator protein A (DNA_processg_A)

(69-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

44.819

100

0.49
  dprA Neisseria gonorrhoeae MS11

45.052

100

0.49
  dprA Neisseria meningitidis strain C311

44.103

100

0.487
  dprA Neisseria meningitidis MC58

44.103

100

0.487
  dprA Vibrio campbellii strain DS40M4

42.424

100

0.436
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.659

100

0.436
  dprA Vibrio cholerae strain A1552

41.573

100

0.419
  dprA Glaesserella parasuis strain SC1401

38.736

100

0.399
  dprA Legionella pneumophila strain ERS1305867

43.849

89.802

0.394
  dprA Acinetobacter baumannii strain A118

38.776

97.167

0.377
  dprA Thermus thermophilus HB27

40.764

88.952

0.363

Multiple sequence alignment