Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   FVA71_RS04300 Genome accession   NZ_CP042878
Coordinates   903673..904860 (-) Length   395 a.a.
NCBI ID   WP_001161839.1    Uniprot ID   -
Organism   Escherichia coli strain NMBU_W05E18     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 898673..909860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVA71_RS04280 (FVA71_04410) - 898976..900346 (+) 1371 WP_089564247.1 hypothetical protein -
  FVA71_RS04285 (FVA71_04415) - 900343..901059 (+) 717 WP_000600935.1 glycosyltransferase family 2 protein -
  FVA71_RS04290 (FVA71_04420) - 901062..901430 (+) 369 WP_001564070.1 capsule biosynthesis phosphatase -
  FVA71_RS04295 (FVA71_04425) - 901427..903004 (+) 1578 WP_001564069.1 nucleotidyltransferase family protein -
  FVA71_RS04300 (FVA71_04430) kpsS 903673..904860 (-) 1188 WP_001161839.1 capsular biosynthesis protein Regulator
  FVA71_RS04305 (FVA71_04435) - 904895..906922 (-) 2028 WP_021572937.1 capsular polysaccharide biosynthesis protein -
  FVA71_RS04310 (FVA71_04440) kdsB 906919..907659 (-) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FVA71_RS04315 (FVA71_04445) - 907669..909345 (-) 1677 WP_001323195.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 47040.40 Da        Isoelectric Point: 10.1525

>NTDB_id=332464 FVA71_RS04300 WP_001161839.1 903673..904860(-) (kpsS) [Escherichia coli strain NMBU_W05E18]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLTPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKLLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGGFKKK

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=332464 FVA71_RS04300 WP_001161839.1 903673..904860(-) (kpsS) [Escherichia coli strain NMBU_W05E18]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGATGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGCGGGGATCGTTTTTACTGCC
GTCATCGACAATACCTGGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGACAATATGAC
TTTGACACTATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGGTGGGCAAAGTCGAAAGGTATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCATGTTGAGAACTTAACACCTTCAACAATG
AAACGTATTGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGCTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCTAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATGGGGGCTTTAAAAAAAAATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.051

99.241

0.397

Multiple sequence alignment