Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ELB75_RS12225 Genome accession   NZ_CP034670
Coordinates   2418716..2419951 (+) Length   411 a.a.
NCBI ID   WP_126984127.1    Uniprot ID   A0A3S9SMA7
Organism   Eikenella corrodens strain KCOM 3110     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2413716..2424951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS12215 (ELB75_12215) recJ 2415077..2416774 (+) 1698 WP_126984125.1 single-stranded-DNA-specific exonuclease RecJ -
  ELB75_RS12220 (ELB75_12220) pilF 2417020..2418684 (+) 1665 WP_126984126.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ELB75_RS12225 (ELB75_12225) pilG 2418716..2419951 (+) 1236 WP_126984127.1 type II secretion system F family protein Machinery gene
  ELB75_RS12230 (ELB75_12230) pilD 2420043..2420900 (+) 858 WP_126984128.1 A24 family peptidase Machinery gene
  ELB75_RS12235 (ELB75_12235) coaE 2420902..2421507 (+) 606 WP_126984129.1 dephospho-CoA kinase -
  ELB75_RS12240 (ELB75_12240) zapD 2421511..2422287 (+) 777 WP_206501462.1 cell division protein ZapD -
  ELB75_RS12245 (ELB75_12245) yacG 2422284..2422466 (+) 183 WP_126984130.1 DNA gyrase inhibitor YacG -
  ELB75_RS12250 (ELB75_12250) rlmD 2422534..2423826 (+) 1293 WP_126984308.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  ELB75_RS12255 (ELB75_12255) - 2423857..2424834 (-) 978 WP_126984131.1 IS30 family transposase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45402.34 Da        Isoelectric Point: 9.2667

>NTDB_id=332345 ELB75_RS12225 WP_126984127.1 2418716..2419951(+) (pilG) [Eikenella corrodens strain KCOM 3110]
MATNKRNQSNKKVAGTSYEFEGRHLESEQIVRGEVVAKDEQDARAKLARRRIKVISLHKKKKVREKKITQGDITVFTRQL
STMMKAGLPVMQAFDIVAKGHSNASMTKLLMEVRNDIEQGTSMANAFRKHPKYFDDFYCNLVDAGEAGGVLENLLDKLAT
YMEKTQAIKKKIKSALTYPIAVVVVAIILVIIMMMFVLPEFKKVYDGMNAEMPALTQFMMGISDFMVAYGWIVIIAMIGA
VVAFIQWHKRSFELQKRIDALLLKMPIFGNIVEKGTIARWARTTATLFTAGVPLVEALDSVGGASGNIIYEEATKSIRNQ
VNQGSSLTTAMGSTDLFPNMVLQMASIGEESGSLDDMLNKAAEFYEEEVDIAVATLSSLMEPIIMVVLGSIIGVILVSMY
LPLFNLGSVVG

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=332345 ELB75_RS12225 WP_126984127.1 2418716..2419951(+) (pilG) [Eikenella corrodens strain KCOM 3110]
ATGGCTACAAACAAACGAAACCAATCCAATAAAAAAGTGGCGGGAACCAGCTACGAATTTGAAGGCCGGCACCTAGAGTC
CGAGCAAATCGTCCGTGGCGAGGTAGTTGCCAAAGACGAGCAGGACGCACGTGCCAAACTTGCCCGCCGCCGAATCAAGG
TTATCAGCCTGCATAAAAAGAAAAAAGTTCGCGAAAAGAAAATCACCCAGGGCGACATTACCGTATTCACCCGCCAGCTA
TCCACTATGATGAAAGCAGGCCTACCGGTGATGCAGGCGTTTGATATTGTAGCCAAAGGCCACTCCAACGCCTCCATGAC
CAAGCTCTTGATGGAAGTGCGCAACGACATCGAACAAGGTACCTCTATGGCCAATGCATTCCGCAAGCATCCGAAATATT
TTGATGACTTCTATTGCAACCTGGTGGATGCCGGTGAGGCAGGCGGTGTACTGGAAAACCTGCTGGATAAACTGGCCACC
TATATGGAAAAAACCCAGGCCATCAAAAAGAAAATCAAAAGTGCGCTTACCTATCCGATTGCAGTAGTGGTAGTAGCCAT
TATATTGGTTATCATCATGATGATGTTCGTATTACCAGAATTTAAAAAGGTATATGACGGCATGAACGCCGAAATGCCGG
CACTAACCCAATTCATGATGGGTATTTCTGACTTTATGGTTGCATACGGCTGGATCGTAATCATCGCGATGATTGGTGCC
GTAGTGGCTTTCATTCAATGGCATAAACGCTCCTTCGAACTGCAAAAACGTATCGATGCCCTCTTGCTCAAAATGCCTAT
CTTCGGCAACATCGTGGAAAAAGGCACAATTGCCCGATGGGCTCGTACCACCGCTACCCTGTTTACTGCCGGCGTACCGC
TAGTAGAGGCGCTAGATTCCGTAGGCGGTGCATCAGGCAACATCATTTATGAAGAGGCTACTAAAAGCATCCGTAACCAA
GTGAACCAAGGTAGCTCATTAACCACTGCCATGGGCTCAACCGACTTGTTCCCCAATATGGTTTTGCAAATGGCCTCCAT
TGGTGAAGAATCCGGCTCGCTGGACGACATGCTCAACAAAGCAGCCGAATTCTATGAGGAAGAAGTGGATATTGCCGTTG
CTACCCTTTCCTCCTTGATGGAACCGATTATTATGGTGGTTTTGGGCAGTATCATTGGTGTAATTCTAGTGTCCATGTAC
CTGCCACTGTTCAACCTGGGTAGCGTAGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9SMA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

65.729

95.134

0.625
  pilG Neisseria meningitidis 44/76-A

65.473

95.134

0.623
  pilC Legionella pneumophila strain ERS1305867

49.246

96.837

0.477
  pilC Pseudomonas stutzeri DSM 10701

45.679

98.54

0.45
  pilC Acinetobacter baumannii D1279779

44.862

97.08

0.436
  pilC Acinetobacter baylyi ADP1

45.078

93.917

0.423
  pilC Vibrio cholerae strain A1552

38.596

97.08

0.375
  pilC Vibrio campbellii strain DS40M4

37.594

97.08

0.365

Multiple sequence alignment