Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ELB75_RS12230 Genome accession   NZ_CP034670
Coordinates   2420043..2420900 (+) Length   285 a.a.
NCBI ID   WP_126984128.1    Uniprot ID   A0A3S9SME1
Organism   Eikenella corrodens strain KCOM 3110     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2415043..2425900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS12215 (ELB75_12215) recJ 2415077..2416774 (+) 1698 WP_126984125.1 single-stranded-DNA-specific exonuclease RecJ -
  ELB75_RS12220 (ELB75_12220) pilF 2417020..2418684 (+) 1665 WP_126984126.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ELB75_RS12225 (ELB75_12225) pilG 2418716..2419951 (+) 1236 WP_126984127.1 type II secretion system F family protein Machinery gene
  ELB75_RS12230 (ELB75_12230) pilD 2420043..2420900 (+) 858 WP_126984128.1 A24 family peptidase Machinery gene
  ELB75_RS12235 (ELB75_12235) coaE 2420902..2421507 (+) 606 WP_126984129.1 dephospho-CoA kinase -
  ELB75_RS12240 (ELB75_12240) zapD 2421511..2422287 (+) 777 WP_206501462.1 cell division protein ZapD -
  ELB75_RS12245 (ELB75_12245) yacG 2422284..2422466 (+) 183 WP_126984130.1 DNA gyrase inhibitor YacG -
  ELB75_RS12250 (ELB75_12250) rlmD 2422534..2423826 (+) 1293 WP_126984308.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  ELB75_RS12255 (ELB75_12255) - 2423857..2424834 (-) 978 WP_126984131.1 IS30 family transposase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31482.57 Da        Isoelectric Point: 8.7511

>NTDB_id=332346 ELB75_RS12230 WP_126984128.1 2420043..2420900(+) (pilD) [Eikenella corrodens strain KCOM 3110]
MTNLDPEIYIPFAVLLGLLVGSFLNVVIYRLPVMLEKQWRIAAKQHLELPLDEEDQKPFNISTPPSRCPKCGSPVKPWQN
IPIISYLLLRGRCHSCHTPIGWRYPAVELLTGILFGIVAWRYSYTWLTLGGLVFTAVLVALTFIDADTQLLPDQLTLPLI
WLGLLFNWQVGFVSLPSALLGAVVGYLSLWLLYHLFKLITGKEGMGYGDFKLLAALGAWLGVSTLPVIVFVAALVGLVAA
LVMRAAKGQPIAFGPALAIAGWLVFAANSYILQGIQWWLHKSGFI

Nucleotide


Download         Length: 858 bp        

>NTDB_id=332346 ELB75_RS12230 WP_126984128.1 2420043..2420900(+) (pilD) [Eikenella corrodens strain KCOM 3110]
ATGACCAATCTTGATCCCGAAATCTACATCCCCTTCGCCGTCCTGCTCGGCCTGCTGGTGGGCAGCTTTCTCAACGTGGT
TATCTACCGCCTGCCGGTCATGCTCGAGAAACAATGGCGCATCGCGGCCAAACAGCATCTCGAACTGCCGCTGGACGAAG
AAGACCAAAAACCATTCAACATCAGCACCCCGCCCTCGCGCTGCCCCAAATGCGGCAGCCCGGTGAAGCCGTGGCAAAAC
ATCCCCATCATCAGCTATCTGCTGCTGCGCGGCCGCTGCCATAGCTGCCACACCCCAATCGGCTGGCGCTACCCCGCCGT
CGAGCTGCTCACCGGCATCCTCTTTGGCATCGTCGCCTGGCGCTACAGCTACACTTGGCTCACCCTTGGCGGCCTCGTGT
TCACCGCCGTGCTGGTTGCCCTCACCTTTATCGATGCCGACACCCAGCTCTTGCCCGACCAGCTCACCCTGCCCCTGATT
TGGCTCGGTCTGCTGTTTAACTGGCAGGTCGGCTTCGTCAGCCTGCCTTCAGCCCTGCTCGGCGCCGTGGTCGGCTATTT
GAGCCTCTGGCTGCTGTACCACCTGTTCAAACTCATCACCGGCAAGGAAGGCATGGGTTATGGCGACTTCAAACTACTCG
CCGCACTGGGTGCCTGGCTCGGCGTTAGCACCCTGCCCGTTATTGTTTTCGTGGCCGCCTTGGTTGGCCTGGTTGCCGCC
TTGGTGATGCGTGCCGCCAAAGGCCAGCCCATTGCCTTCGGCCCCGCGCTCGCCATTGCCGGCTGGCTGGTTTTCGCTGC
CAACAGCTATATCCTGCAAGGCATCCAATGGTGGCTGCACAAATCCGGATTCATCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-122)

Type IV leader peptidase family (Peptidase_A24)

(132-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9SME1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

64.074

94.737

0.607
  pilD Acinetobacter nosocomialis M2

49.632

95.439

0.474
  pilD Acinetobacter baumannii D1279779

49.265

95.439

0.47
  pilD Vibrio cholerae strain A1552

50

92.632

0.463
  pilD Vibrio campbellii strain DS40M4

49.43

92.281

0.456

Multiple sequence alignment