Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | KWO_RS16590 | Genome accession | NZ_CP034655 |
| Coordinates | 3578481..3579737 (+) | Length | 418 a.a. |
| NCBI ID | WP_026113135.1 | Uniprot ID | - |
| Organism | Xanthomonas vasicola pv. musacearum NCPPB 4379 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3573481..3584737
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KWO_RS16575 (KWO_016575) | pilB | 3575395..3577128 (-) | 1734 | WP_010375213.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KWO_RS16580 (KWO_016580) | - | 3577193..3577625 (-) | 433 | Protein_3051 | pilin | - |
| KWO_RS16585 (KWO_016585) | pilA/pilAI | 3577701..3578117 (-) | 417 | WP_010375211.1 | pilin | Machinery gene |
| KWO_RS16590 (KWO_016590) | pilC | 3578481..3579737 (+) | 1257 | WP_026113135.1 | type II secretion system F family protein | Machinery gene |
| KWO_RS16595 (KWO_016595) | - | 3579744..3580607 (+) | 864 | WP_010375207.1 | A24 family peptidase | - |
| KWO_RS16600 (KWO_016600) | coaE | 3580621..3581265 (+) | 645 | WP_010375205.1 | dephospho-CoA kinase | - |
| KWO_RS16605 (KWO_016605) | - | 3581404..3582387 (+) | 984 | WP_017113471.1 | IS5 family transposase | - |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45573.85 Da Isoelectric Point: 10.3457
>NTDB_id=332153 KWO_RS16590 WP_026113135.1 3578481..3579737(+) (pilC) [Xanthomonas vasicola pv. musacearum NCPPB 4379]
MAAVRSVVRSKPASQAEQMSTFVWEGTDKRGVKMKGEQTSKNANLLRAELRRQGITPTVVKAKPKPLFGAAGKKISPKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQVRTDIEGGSSLHEAVSKHPVQFDELYRNLIRAGEGAGVLET
VLDTIASYKENIEALKGKIKKALFYPSMVVAVALLVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLI
LFVVIGAVVGFIFAYKRSPAMQHGMDRLILRVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEKA
VLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG
MAAVRSVVRSKPASQAEQMSTFVWEGTDKRGVKMKGEQTSKNANLLRAELRRQGITPTVVKAKPKPLFGAAGKKISPKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQVRTDIEGGSSLHEAVSKHPVQFDELYRNLIRAGEGAGVLET
VLDTIASYKENIEALKGKIKKALFYPSMVVAVALLVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLI
LFVVIGAVVGFIFAYKRSPAMQHGMDRLILRVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEKA
VLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG
Nucleotide
Download Length: 1257 bp
>NTDB_id=332153 KWO_RS16590 WP_026113135.1 3578481..3579737(+) (pilC) [Xanthomonas vasicola pv. musacearum NCPPB 4379]
ATGGCAGCAGTGCGTAGCGTAGTCAGGAGCAAGCCGGCCTCACAGGCCGAACAGATGAGCACGTTTGTCTGGGAGGGGAC
GGACAAGCGCGGCGTAAAGATGAAGGGTGAGCAGACCTCCAAGAACGCAAATTTGCTACGAGCGGAATTGCGACGCCAGG
GGATCACGCCGACCGTAGTGAAGGCGAAACCTAAGCCGCTGTTTGGTGCTGCGGGAAAGAAGATCTCCCCGAAGGACATT
TCTTTCTTCAGCCGGCAAATGGCAACAATGATGAAATCCGGTGTGCCCATCGTAGGTGCACTGGAAATCATTGGCAGTGG
CCAGAAAAATCCGCGCATGCGCAACATGGTCGGCCAAGTCCGCACCGATATTGAGGGAGGCTCATCGCTGCACGAAGCAG
TAAGCAAGCATCCGGTTCAGTTCGACGAGTTGTACAGAAATTTGATCAGAGCAGGCGAAGGCGCAGGCGTGCTCGAAACG
GTACTCGACACCATTGCAAGTTATAAGGAAAACATCGAAGCGCTGAAAGGCAAAATCAAGAAGGCCTTGTTTTACCCATC
GATGGTCGTCGCTGTAGCGTTACTAGTCAGTGCGATCTTGTTGATCTTTGTTGTTCCTCAATTCGAAGATGTCTTCAAAG
GCTTTGGTGCAGAACTACCGGCGTTCACACAGATGATCGTCAACCTGTCGAGGTTCATGGTGTCGTGGTGGTGGCTGATC
TTGTTCGTCGTGATCGGCGCAGTCGTTGGCTTCATCTTTGCCTACAAACGGTCGCCGGCTATGCAGCACGGCATGGATCG
ACTGATTCTTAGGGTACCGATCATCGGGCAAATCATGCATAACAGCTCGATTGCACGTTTTGCGCGAACCACCGCAGTGA
CGTTCAAGGCCGGCGTACCATTGGTTGAAGCACTCAGCATTGTTGCCGGTGCCACAGGCAATTCGGTTTACGAGAAAGCA
GTGCTGCGGATGCGCGATGATGTCTCTGTTGGCTATCCAGTCAACGTGGCAATGAAGCAGGTCAACCTGTTCCCTCACAT
GGTCGTACAGATGACCGCAATCGGCGAAGAAGCGGGCGCTTTGGATGCCATGCTGTTCAAGGTGGCAGAGTACTTCGAGC
AAGAGGTCAACAACGCTGTCGACGCGCTTAGCAGCCTGATCGAGCCCCTTATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA
ATGGCAGCAGTGCGTAGCGTAGTCAGGAGCAAGCCGGCCTCACAGGCCGAACAGATGAGCACGTTTGTCTGGGAGGGGAC
GGACAAGCGCGGCGTAAAGATGAAGGGTGAGCAGACCTCCAAGAACGCAAATTTGCTACGAGCGGAATTGCGACGCCAGG
GGATCACGCCGACCGTAGTGAAGGCGAAACCTAAGCCGCTGTTTGGTGCTGCGGGAAAGAAGATCTCCCCGAAGGACATT
TCTTTCTTCAGCCGGCAAATGGCAACAATGATGAAATCCGGTGTGCCCATCGTAGGTGCACTGGAAATCATTGGCAGTGG
CCAGAAAAATCCGCGCATGCGCAACATGGTCGGCCAAGTCCGCACCGATATTGAGGGAGGCTCATCGCTGCACGAAGCAG
TAAGCAAGCATCCGGTTCAGTTCGACGAGTTGTACAGAAATTTGATCAGAGCAGGCGAAGGCGCAGGCGTGCTCGAAACG
GTACTCGACACCATTGCAAGTTATAAGGAAAACATCGAAGCGCTGAAAGGCAAAATCAAGAAGGCCTTGTTTTACCCATC
GATGGTCGTCGCTGTAGCGTTACTAGTCAGTGCGATCTTGTTGATCTTTGTTGTTCCTCAATTCGAAGATGTCTTCAAAG
GCTTTGGTGCAGAACTACCGGCGTTCACACAGATGATCGTCAACCTGTCGAGGTTCATGGTGTCGTGGTGGTGGCTGATC
TTGTTCGTCGTGATCGGCGCAGTCGTTGGCTTCATCTTTGCCTACAAACGGTCGCCGGCTATGCAGCACGGCATGGATCG
ACTGATTCTTAGGGTACCGATCATCGGGCAAATCATGCATAACAGCTCGATTGCACGTTTTGCGCGAACCACCGCAGTGA
CGTTCAAGGCCGGCGTACCATTGGTTGAAGCACTCAGCATTGTTGCCGGTGCCACAGGCAATTCGGTTTACGAGAAAGCA
GTGCTGCGGATGCGCGATGATGTCTCTGTTGGCTATCCAGTCAACGTGGCAATGAAGCAGGTCAACCTGTTCCCTCACAT
GGTCGTACAGATGACCGCAATCGGCGAAGAAGCGGGCGCTTTGGATGCCATGCTGTTCAAGGTGGCAGAGTACTTCGAGC
AAGAGGTCAACAACGCTGTCGACGCGCTTAGCAGCCTGATCGAGCCCCTTATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
52.84 |
96.89 |
0.512 |
| pilC | Acinetobacter baylyi ADP1 |
50.739 |
97.129 |
0.493 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.637 |
94.976 |
0.49 |
| pilC | Acinetobacter baumannii D1279779 |
49.752 |
96.651 |
0.481 |
| pilG | Neisseria gonorrhoeae MS11 |
43.103 |
97.129 |
0.419 |
| pilG | Neisseria meningitidis 44/76-A |
42.611 |
97.129 |
0.414 |
| pilC | Vibrio cholerae strain A1552 |
40.394 |
97.129 |
0.392 |
| pilC | Vibrio campbellii strain DS40M4 |
39.95 |
96.411 |
0.385 |
| pilC | Thermus thermophilus HB27 |
37.656 |
95.933 |
0.361 |