Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EKH72_RS03140 | Genome accession | NZ_CP034565 |
| Coordinates | 590631..591044 (-) | Length | 137 a.a. |
| NCBI ID | WP_029831396.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain D3112 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 585631..596044
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKH72_RS03120 | coaE | 586148..586762 (-) | 615 | WP_129829844.1 | dephospho-CoA kinase | - |
| EKH72_RS03125 | pilD | 586763..587632 (-) | 870 | WP_129829845.1 | A24 family peptidase | Machinery gene |
| EKH72_RS03130 | pilC | 587697..588920 (-) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| EKH72_RS03135 | pilB | 588945..590630 (-) | 1686 | WP_129829846.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EKH72_RS03140 | pilA | 590631..591044 (-) | 414 | WP_029831396.1 | pilin | Machinery gene |
| EKH72_RS03145 | nadC | 591307..592194 (-) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| EKH72_RS03150 | ampD | 592287..592838 (+) | 552 | WP_129830503.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EKH72_RS03155 | pdhR | 593244..594011 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 13859.75 Da Isoelectric Point: 8.4778
>NTDB_id=331931 EKH72_RS03140 WP_029831396.1 590631..591044(-) (pilA) [Vibrio parahaemolyticus strain D3112]
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYKDYVSKSELASGFATIKSVITPAELYIQENGAISGASPSDLGVSA
GANSLGTLSISGNAVVFTHNNGAVSGAAFTYSRGTSSGWTCALTGQPTGVDAPKGCS
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYKDYVSKSELASGFATIKSVITPAELYIQENGAISGASPSDLGVSA
GANSLGTLSISGNAVVFTHNNGAVSGAAFTYSRGTSSGWTCALTGQPTGVDAPKGCS
Nucleotide
Download Length: 414 bp
>NTDB_id=331931 EKH72_RS03140 WP_029831396.1 590631..591044(-) (pilA) [Vibrio parahaemolyticus strain D3112]
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCAATTATTGGTGTACT
GTCCGCAATTGCAGTCCCAGCATATAAAGATTATGTATCAAAGAGTGAGTTAGCATCTGGTTTCGCTACCATAAAATCAG
TAATCACTCCTGCCGAATTATATATACAAGAAAATGGCGCTATATCTGGAGCAAGCCCTAGTGACCTAGGAGTATCTGCT
GGTGCCAACAGCCTAGGAACACTATCTATCAGCGGTAATGCCGTTGTATTTACTCACAACAATGGAGCTGTATCTGGTGC
GGCTTTCACATATAGCAGAGGCACTAGTTCCGGTTGGACATGTGCTTTGACAGGACAACCAACTGGGGTTGATGCTCCAA
AAGGTTGCTCATAA
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCAATTATTGGTGTACT
GTCCGCAATTGCAGTCCCAGCATATAAAGATTATGTATCAAAGAGTGAGTTAGCATCTGGTTTCGCTACCATAAAATCAG
TAATCACTCCTGCCGAATTATATATACAAGAAAATGGCGCTATATCTGGAGCAAGCCCTAGTGACCTAGGAGTATCTGCT
GGTGCCAACAGCCTAGGAACACTATCTATCAGCGGTAATGCCGTTGTATTTACTCACAACAATGGAGCTGTATCTGGTGC
GGCTTTCACATATAGCAGAGGCACTAGTTCCGGTTGGACATGTGCTTTGACAGGACAACCAACTGGGGTTGATGCTCCAA
AAGGTTGCTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
51.408 |
100 |
0.533 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.474 |
100 |
0.438 |
| pilA | Vibrio cholerae strain A1552 |
39.474 |
100 |
0.438 |
| pilA | Vibrio cholerae C6706 |
39.474 |
100 |
0.438 |
| pilA | Acinetobacter baumannii strain A118 |
40.69 |
100 |
0.431 |
| pilA | Pseudomonas aeruginosa PAK |
38 |
100 |
0.416 |