Detailed information NTG0331928

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EKH72_RS03125
• Genome accession: NZ_CP034565
• Coordinates: 586763..587632 (-)
• Length: 289 a.a.
• NCBI ID: WP_129829845.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain D3112
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 581763..592632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EKH72_RS03090	rpsP	582740..582988 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
EKH72_RS03095	rimM	583017..583565 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
EKH72_RS03100	trmD	583593..584336 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
EKH72_RS03105	rplS	584378..584731 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
EKH72_RS03110	yacG	585117..585311 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
EKH72_RS03115	zapD	585380..586120 (-)	741	WP_015297254.1	cell division protein ZapD	-
EKH72_RS03120	coaE	586148..586762 (-)	615	WP_129829844.1	dephospho-CoA kinase	-
EKH72_RS03125	pilD	586763..587632 (-)	870	WP_129829845.1	A24 family peptidase	Machinery gene
EKH72_RS03130	pilC	587697..588920 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
EKH72_RS03135	pilB	588945..590630 (-)	1686	WP_129829846.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EKH72_RS03140	pilA	590631..591044 (-)	414	WP_029831396.1	pilin	Machinery gene
EKH72_RS03145	nadC	591307..592194 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32407.46 Da
• Isoelectric Point: 6.8211

>NTDB_id=331928 EKH72_RS03125 WP_129829845.1 586763..587632(-) (pilD) [Vibrio parahaemolyticus strain D3112]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSEPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=331928 EKH72_RS03125 WP_129829845.1 586763..587632(-) (pilD) [Vibrio parahaemolyticus strain D3112]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGAGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTATGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446