Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EJN92_RS13625 Genome accession   NZ_CP034464
Coordinates   3111473..3112705 (-) Length   410 a.a.
NCBI ID   WP_126128333.1    Uniprot ID   A0A3S9HLG3
Organism   Undibacterium parvum strain DSM 23061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3106473..3117705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN92_RS13595 (EJN92_13595) - 3106720..3107319 (+) 600 WP_126128327.1 hypothetical protein -
  EJN92_RS13600 (EJN92_13600) - 3107335..3108894 (+) 1560 WP_126128328.1 sigma-54-dependent transcriptional regulator -
  EJN92_RS13605 (EJN92_13605) yacG 3108925..3109116 (-) 192 WP_126128329.1 DNA gyrase inhibitor YacG -
  EJN92_RS13610 (EJN92_13610) zapD 3109148..3109903 (-) 756 WP_126128330.1 cell division protein ZapD -
  EJN92_RS13615 (EJN92_13615) coaE 3109999..3110607 (-) 609 WP_126128331.1 dephospho-CoA kinase -
  EJN92_RS13620 (EJN92_13620) pilD 3110607..3111473 (-) 867 WP_126128332.1 A24 family peptidase Machinery gene
  EJN92_RS13625 (EJN92_13625) pilC 3111473..3112705 (-) 1233 WP_126128333.1 type II secretion system F family protein Machinery gene
  EJN92_RS13630 (EJN92_13630) pilB 3112724..3114454 (-) 1731 WP_126128334.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EJN92_RS13635 (EJN92_13635) ispB 3115439..3116419 (-) 981 WP_227869540.1 octaprenyl diphosphate synthase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44763.71 Da        Isoelectric Point: 9.7745

>NTDB_id=331494 EJN92_RS13625 WP_126128333.1 3111473..3112705(-) (pilC) [Undibacterium parvum strain DSM 23061]
MATTQKKSVKLAQVKEQLYAWEGKDKMGKTVRGELRAGGEAIVNATLRRQGILVSKVKKKSYSTGKKITDKDITLFTRQL
ATMMKAGVPLLQSFDIVGKGHSNPSVSKLLQDIRADVETGSSLNQAFRKYPLYFDPLFCNLVGAGEQAGILEDLLTRLAI
YKEKTLMIKAKIKSALTYPIAILSVAFIVTAVIMIWVVPAFKEVFSSFGAELPGPTLVVMAISDFFVSNWYFIFGGLFGA
IYFFMHTWKRSLNMQRFMDRILLQAPIFGDVIRKATIARWTRTLATMFAAGVPLVEALDSVGGAAGNAVYLDATVKIQTE
VTTGTSLTVAMQNANVFPNMVTQMVSIGEESGSLDAMLGKVADFYEEEVDDAVSNLASLMEPMIMAILGVIIGGLVVALY
LPIFKLGSVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=331494 EJN92_RS13625 WP_126128333.1 3111473..3112705(-) (pilC) [Undibacterium parvum strain DSM 23061]
ATGGCAACGACACAAAAAAAATCGGTTAAATTAGCACAAGTAAAAGAGCAATTGTATGCCTGGGAAGGCAAAGACAAAAT
GGGAAAAACCGTGCGCGGTGAGTTGCGCGCGGGAGGGGAGGCGATCGTCAATGCAACTTTACGACGTCAAGGTATCCTAG
TCAGCAAGGTTAAGAAAAAAAGTTATAGTACTGGAAAAAAAATAACTGACAAAGACATCACTTTATTTACTCGCCAATTG
GCAACGATGATGAAGGCAGGCGTACCACTATTGCAATCTTTCGATATCGTAGGTAAAGGTCACTCCAATCCATCCGTATC
TAAATTATTACAAGACATACGTGCTGACGTAGAAACTGGCAGCAGTCTGAATCAAGCATTTCGGAAATACCCTCTTTATT
TTGATCCACTGTTTTGTAATTTGGTCGGCGCTGGTGAGCAGGCAGGTATCTTGGAAGACTTACTGACTCGTTTAGCCATT
TACAAAGAAAAAACCTTAATGATTAAGGCTAAAATTAAATCGGCACTCACTTATCCAATTGCGATTCTCTCTGTCGCATT
TATTGTCACCGCTGTCATTATGATTTGGGTGGTTCCTGCGTTTAAAGAAGTGTTTTCCAGCTTTGGCGCAGAACTCCCTG
GGCCAACTCTGGTAGTAATGGCCATTTCAGATTTTTTTGTTTCAAACTGGTATTTTATTTTTGGTGGTTTGTTTGGCGCA
ATTTACTTCTTTATGCACACGTGGAAGCGCTCGCTCAATATGCAGCGTTTCATGGATAGAATATTATTGCAAGCACCTAT
CTTTGGTGATGTGATACGTAAAGCAACGATTGCTCGCTGGACACGTACCCTGGCAACCATGTTTGCCGCTGGCGTTCCCT
TGGTGGAGGCATTGGATTCCGTCGGGGGAGCAGCCGGTAATGCGGTCTACCTAGATGCAACCGTTAAAATACAGACCGAA
GTAACCACTGGCACCAGTCTCACCGTTGCCATGCAAAATGCAAATGTATTTCCCAATATGGTGACACAAATGGTCTCTAT
CGGTGAGGAGTCTGGATCGCTCGACGCGATGTTAGGCAAAGTAGCCGATTTTTACGAAGAGGAAGTAGATGACGCGGTCT
CCAACTTAGCCAGCCTTATGGAACCTATGATTATGGCGATACTCGGCGTGATTATTGGTGGTTTGGTGGTTGCGCTTTAT
CTCCCTATCTTTAAATTAGGCTCGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9HLG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.25

97.561

0.529
  pilG Neisseria gonorrhoeae MS11

54.156

96.829

0.524
  pilG Neisseria meningitidis 44/76-A

53.904

96.829

0.522
  pilC Legionella pneumophila strain ERS1305867

53.283

96.585

0.515
  pilC Acinetobacter baumannii D1279779

50.245

99.512

0.5
  pilC Acinetobacter baylyi ADP1

49.749

97.073

0.483
  pilC Vibrio cholerae strain A1552

40.909

96.585

0.395
  pilC Vibrio campbellii strain DS40M4

40.05

96.829

0.388

Multiple sequence alignment