Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   FGL89_RS00105 Genome accession   NZ_CP042374
Coordinates   25220..27613 (+) Length   797 a.a.
NCBI ID   WP_014974487.1    Uniprot ID   K0DD13
Organism   Leuconostoc carnosum strain CBA3620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 20220..32613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL89_RS00080 (FGL89_00080) rbsK 20450..21361 (+) 912 WP_014974492.1 ribokinase -
  FGL89_RS00085 (FGL89_00085) - 21361..22809 (+) 1449 WP_014974491.1 RsmF rRNA methyltransferase first C-terminal domain-containing protein -
  FGL89_RS00090 (FGL89_00090) - 22952..24067 (+) 1116 WP_014974490.1 BMP family lipoprotein -
  FGL89_RS00095 (FGL89_00095) - 24194..24541 (+) 348 WP_014974489.1 cysteine desulfurase -
  FGL89_RS00100 (FGL89_00100) - 24534..25187 (+) 654 WP_014974488.1 histidine phosphatase family protein -
  FGL89_RS00105 (FGL89_00105) recD/recD2/recDB 25220..27613 (+) 2394 WP_014974487.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FGL89_RS00110 (FGL89_00110) - 27654..28628 (+) 975 WP_014974486.1 ribose-phosphate diphosphokinase -
  FGL89_RS00115 (FGL89_00115) - 28625..29518 (+) 894 WP_014974485.1 GDSL-type esterase/lipase family protein -
  FGL89_RS00120 (FGL89_00120) - 29521..30513 (+) 993 WP_014974484.1 aldo/keto reductase -
  FGL89_RS00125 (FGL89_00125) - 30776..31609 (+) 834 WP_014974483.1 class A sortase -
  FGL89_RS00130 (FGL89_00130) mvk 31662..32594 (-) 933 WP_147000250.1 mevalonate kinase -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 88212.46 Da        Isoelectric Point: 4.9904

>NTDB_id=331493 FGL89_RS00105 WP_014974487.1 25220..27613(+) (recD/recD2/recDB) [Leuconostoc carnosum strain CBA3620]
MAYQEQQLEKITGTLQNVIFASSDSYFKILSIQIDDSTLEDWDEPEIIATGTFADVQEGSVYAFYGNVVRHPKYGKQLKV
ERYENELPPDENGLIKYFASGQFSGIGQKTAEKIVDHLGLNAVNLILDDTSILDGIVKESQAKKLARTLQLNLGLERLFQ
VGNQFGIGADIAGRLFDQYGNEAQDILTQDPFRLVFEFDGISFKTADQIGHKIGINRDDKRRLQAAVYATIMNVSFQHGH
TYLTRQQLQQTSIHMLRDNSMSNEVELAIDTLLDNETLVADDDRLYTASLYAAEKSVAHDLKRLLQAKNPLDLTENDICD
AFVTPGNMTLDDMQRQAIQLGLSAQVFVLTGGPGTGKTTIVRSIVATWHQLLKDRVKFADDAKAFLKTYAVKMASPTGRA
AKRMTEVTGYEATTIHRLLGIADLDEPEFNIDNPLAGGLMIIDEASMLDIELTAKLLAAVPNGMKLIIVGDSDQLPSVGP
GNVLADLVNSGVIAHAELEIIYRQGRGSSITALAQHIKQGELPSDFLNNQLDRSAFMVAPEQADAAIKQVIEAAVKKGYT
QDDLQILTPMYKTPVGVNALNTMAQALFNPSRPTQKSLQFGTTIFRQGDKVLQLENDSERDVFNGDMGKIVVVEYKNDKG
NSDHEDRLVVDFDGKELPYPKKNLNQLTLAYATTVHKAQGNEFKLVIMALTTHFGLMLNRNLLYTGITRAKEALILVGEY
AAFSRAAQTAVPTRLTFLKERLQIDGPRQEIDTVPKKHNNKAIIDHQLTIEMVMTGAIDPLIGLDGLTPYDFMPNIK

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=331493 FGL89_RS00105 WP_014974487.1 25220..27613(+) (recD/recD2/recDB) [Leuconostoc carnosum strain CBA3620]
ATGGCATATCAGGAACAACAATTAGAAAAAATTACTGGGACGTTGCAAAACGTCATTTTTGCGTCCAGTGATTCGTATTT
TAAAATATTATCTATTCAAATTGATGATTCAACATTAGAAGATTGGGACGAACCAGAAATTATTGCAACAGGTACTTTTG
CCGACGTACAAGAAGGTAGTGTTTATGCTTTTTATGGTAATGTTGTGCGTCACCCTAAATATGGGAAACAGCTTAAAGTA
GAACGTTATGAAAATGAATTACCACCAGATGAAAATGGTTTGATTAAGTATTTTGCTAGCGGACAATTTTCTGGTATTGG
TCAAAAAACTGCAGAAAAAATTGTCGATCATTTAGGATTAAACGCAGTCAATCTAATCTTGGATGACACTAGTATTTTGG
ATGGTATTGTTAAAGAATCACAAGCTAAGAAGCTAGCGCGGACATTACAGTTAAATCTAGGATTAGAACGTTTGTTTCAG
GTTGGAAATCAGTTTGGAATTGGTGCTGATATTGCAGGACGGTTGTTTGATCAATATGGGAATGAGGCACAAGATATTCT
AACGCAAGATCCTTTTCGTTTGGTTTTTGAGTTTGATGGTATTTCTTTTAAAACTGCTGATCAAATTGGCCATAAAATTG
GAATTAATCGTGATGATAAACGACGCTTACAAGCAGCAGTGTATGCAACAATTATGAACGTTAGTTTTCAACATGGTCAT
ACTTATTTAACGCGCCAACAGTTGCAACAAACAAGTATCCACATGCTTCGTGATAATAGTATGTCAAATGAAGTTGAATT
AGCAATTGATACATTGCTTGACAACGAGACACTTGTAGCTGATGACGATCGCTTATATACAGCAAGTTTGTATGCGGCGG
AAAAATCGGTGGCTCATGATTTAAAACGTTTATTACAAGCTAAGAATCCACTTGATTTAACTGAAAATGATATTTGTGAT
GCGTTTGTTACACCAGGGAATATGACTTTGGATGATATGCAACGACAAGCAATTCAATTAGGGTTAAGTGCGCAGGTGTT
TGTATTGACTGGTGGTCCGGGTACTGGTAAAACTACCATTGTGCGTTCTATTGTTGCAACATGGCACCAATTATTGAAGG
ATCGTGTTAAATTTGCAGACGATGCTAAGGCGTTCTTGAAAACCTATGCTGTTAAAATGGCTTCTCCCACAGGACGTGCA
GCTAAGCGGATGACAGAGGTGACCGGTTATGAAGCGACAACAATTCATCGTTTACTAGGCATCGCTGATTTAGATGAACC
TGAATTTAATATTGATAATCCACTGGCTGGGGGCTTGATGATTATTGATGAAGCATCAATGTTAGATATTGAGTTAACTG
CGAAACTGTTAGCAGCAGTGCCTAATGGTATGAAGTTAATCATCGTTGGTGATTCGGACCAGTTACCATCAGTAGGACCA
GGCAACGTTTTAGCTGACTTAGTGAATAGTGGTGTCATAGCGCATGCTGAATTAGAAATCATCTATCGTCAAGGTCGAGG
TAGCAGTATTACCGCGCTTGCACAACATATCAAGCAAGGCGAATTGCCGTCAGATTTCTTAAATAATCAGTTAGATCGCT
CAGCATTTATGGTAGCCCCTGAACAAGCGGATGCTGCCATAAAGCAAGTTATAGAGGCAGCTGTTAAAAAAGGTTATACA
CAGGATGACCTGCAAATTCTAACGCCAATGTATAAAACACCAGTTGGAGTGAATGCTTTAAATACTATGGCGCAAGCACT
TTTTAATCCCAGTCGTCCAACACAAAAATCTTTGCAGTTTGGCACAACTATTTTTCGTCAAGGGGACAAAGTATTGCAAC
TCGAAAATGACAGTGAGCGTGATGTTTTTAATGGTGATATGGGTAAAATTGTTGTTGTGGAATATAAAAATGATAAGGGT
AATAGTGATCATGAAGATCGGTTAGTTGTTGATTTTGATGGGAAAGAATTACCTTATCCAAAGAAAAATCTGAATCAATT
AACTTTAGCTTATGCGACAACTGTTCACAAAGCGCAAGGCAATGAATTTAAGTTGGTGATTATGGCATTAACCACACATT
TTGGATTAATGCTGAATCGTAATTTACTTTACACTGGGATTACTCGTGCCAAAGAAGCACTCATCTTAGTAGGAGAATAT
GCAGCCTTTAGCCGAGCGGCACAAACTGCTGTCCCAACACGCTTAACATTTTTAAAAGAACGTTTGCAGATTGATGGGCC
GCGTCAAGAAATAGACACAGTACCTAAAAAACATAACAATAAAGCGATTATTGATCATCAGTTAACGATAGAGATGGTGA
TGACTGGCGCTATTGACCCATTAATTGGGCTAGATGGGCTGACACCTTATGATTTCATGCCAAATATCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-242)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(670-717)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(580-652)

AAA domain (AAA_30)

(330-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DD13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

38.75

100

0.389

Multiple sequence alignment