Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EJF26_RS08665 Genome accession   NZ_CP034442
Coordinates   1690596..1691852 (+) Length   418 a.a.
NCBI ID   WP_000642698.1    Uniprot ID   F9NYV7
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1685596..1696852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS08645 comM 1687802..1688425 (+) 624 WP_004246590.1 hypothetical protein Regulator
  EJF26_RS08650 tsaE 1688529..1688972 (+) 444 WP_000288225.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  EJF26_RS08655 - 1688962..1689483 (+) 522 WP_000455508.1 GNAT family N-acetyltransferase -
  EJF26_RS08660 brpA 1689488..1690522 (+) 1035 WP_025168957.1 biofilm formation/cell division transcriptional regulator BrpA -
  EJF26_RS08665 cinA 1690596..1691852 (+) 1257 WP_000642698.1 competence/damage-inducible protein A Machinery gene
  EJF26_RS08670 recA 1691907..1693055 (+) 1149 WP_001085445.1 recombinase RecA Machinery gene
  EJF26_RS08675 - 1693112..1693666 (-) 555 WP_000060279.1 GNAT family N-acetyltransferase -
  EJF26_RS08680 - 1693776..1695146 (+) 1371 WP_001036201.1 MATE family efflux transporter -
  EJF26_RS08685 - 1695243..1695959 (+) 717 WP_000532888.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EJF26_RS08690 - 1696009..1696713 (-) 705 WP_000675585.1 DUF308 domain-containing protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45092.51 Da        Isoelectric Point: 4.7764

>NTDB_id=331390 EJF26_RS08665 WP_000642698.1 1690596..1691852(+) (cinA) [Streptococcus oralis subsp. dentisani strain F0392]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLMSLLEIASSRSSLVILTGGLGPTEDDLTKQT
LAKFLGKDLVFDPQAQEKLDIFFAHRPDYARTPNNERQAQIVEGATPLPNETGLAVGGVLEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGAKLYSRVLRFFGIGESQLVTILADLIDYQTDPTLAPYAKTGEVTLRLSTKAVSQEKADQALDILENQI
LNRQTFEGLSLRDICYGYGEEASLASVVVEELKKRKKSITAAESLTAGLFQATLADFSGVSAIFNGGFVTYSLEEKSKML
DISEQELKEHGVVSEFTAQKMAEQARLKTQSDYGVSLTGVAGPDSLEGHPAGTVFIGLAHAKGTEVIKANIAGRSRADVR
QIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=331390 EJF26_RS08665 WP_000642698.1 1690596..1691852(+) (cinA) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAAGCAGAAATTATTGCTGTAGGAACGGAAATTTTAACAGGGCAGATCGTCAATACCAACGCCCAGTTTTTATCAGA
AAAGCTAGCAGAAATTGGAGTAGATGTCTACTTCCAAACAGCTGTCGGAGATAATGAAGCGCGTCTCATGTCCTTGCTAG
AGATTGCGAGTTCGCGTAGTAGTCTAGTCATTTTGACAGGGGGCTTAGGGCCAACTGAGGATGATTTGACCAAACAAACT
CTGGCAAAATTTTTAGGAAAAGATCTAGTGTTTGACCCTCAAGCGCAAGAGAAATTAGATATCTTTTTTGCTCATAGACC
TGACTATGCTCGGACACCGAATAATGAGCGCCAAGCCCAAATTGTAGAAGGGGCGACTCCACTGCCAAATGAGACAGGTT
TAGCAGTAGGAGGGGTGTTGGAAGTGGATGGTGTGACCTACGTGGTTCTCCCAGGACCTCCTAGTGAGTTGAAACCTATG
GTCTTAAATCAACTCTTACCTAAGTTAATGACTGGTGCCAAGTTGTACTCACGAGTGCTCCGTTTCTTTGGGATTGGTGA
AAGTCAGTTGGTGACCATTTTAGCGGATTTGATTGACTATCAAACCGATCCGACTTTGGCGCCTTATGCCAAAACGGGAG
AAGTGACCTTGCGTTTGTCTACAAAAGCAGTCAGTCAAGAAAAGGCTGATCAAGCACTGGACATTTTGGAAAATCAAATC
TTGAATCGCCAGACTTTCGAGGGACTTTCTCTGCGAGACATATGTTATGGATATGGCGAAGAGGCCAGCCTAGCAAGTGT
CGTTGTAGAAGAGCTTAAGAAGAGAAAGAAAAGCATTACTGCAGCAGAGAGCTTGACGGCAGGCCTTTTTCAAGCGACAT
TAGCAGACTTTTCAGGCGTTTCTGCCATTTTTAATGGCGGTTTTGTCACATACAGTTTAGAAGAAAAGTCTAAGATGCTG
GATATTTCCGAGCAAGAGCTGAAAGAACACGGGGTCGTTTCAGAGTTTACGGCTCAAAAGATGGCAGAGCAGGCACGGCT
AAAGACTCAGTCTGATTATGGAGTCAGTTTGACGGGTGTGGCTGGGCCAGATAGCCTAGAGGGGCATCCAGCTGGGACAG
TCTTTATTGGCTTGGCACATGCAAAAGGAACAGAGGTGATCAAGGCTAATATCGCAGGGCGGAGCCGAGCAGATGTTCGT
CAGATTGCGGTCATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9NYV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

90.67

100

0.907
  cinA Streptococcus mitis NCTC 12261

89.234

100

0.892
  cinA Streptococcus pneumoniae TIGR4

89.234

100

0.892
  cinA Streptococcus pneumoniae Rx1

89.234

100

0.892
  cinA Streptococcus pneumoniae R6

89.234

100

0.892
  cinA Streptococcus pneumoniae D39

88.995

100

0.89
  cinA Streptococcus mutans UA159

70.813

100

0.708
  cinA Streptococcus suis isolate S10

54.327

99.522

0.541
  cinA Bacillus subtilis subsp. subtilis str. 168

45.215

100

0.452

Multiple sequence alignment