Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   EJF26_RS08645 Genome accession   NZ_CP034442
Coordinates   1687802..1688425 (+) Length   207 a.a.
NCBI ID   WP_004246590.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682802..1693425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS08640 rpoC 1683854..1687519 (+) 3666 WP_000228751.1 DNA-directed RNA polymerase subunit beta' -
  EJF26_RS08645 comM 1687802..1688425 (+) 624 WP_004246590.1 hypothetical protein Regulator
  EJF26_RS08650 tsaE 1688529..1688972 (+) 444 WP_000288225.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  EJF26_RS08655 - 1688962..1689483 (+) 522 WP_000455508.1 GNAT family N-acetyltransferase -
  EJF26_RS08660 brpA 1689488..1690522 (+) 1035 WP_025168957.1 biofilm formation/cell division transcriptional regulator BrpA -
  EJF26_RS08665 cinA 1690596..1691852 (+) 1257 WP_000642698.1 competence/damage-inducible protein A Machinery gene
  EJF26_RS08670 recA 1691907..1693055 (+) 1149 WP_001085445.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23558.51 Da        Isoelectric Point: 10.1101

>NTDB_id=331389 EJF26_RS08645 WP_004246590.1 1687802..1688425(+) (comM) [Streptococcus oralis subsp. dentisani strain F0392]
MIKSIRILLLLALIQISLSSCLLWKGTILTLKQSSAYFLVFIVLASGLCAGMNFFYTQNQDVHSIINSQKKVKLFYSTLL
VLNLVGVCLVLSETILTQTAFQKELVDLFLPSFFFLFGIDLLVFLPFEKYSRDLGATLNKKKTVVLTVLATLLFLRNPMT
VLSIVFYVGLGFVFARFLFPKSMRREFSFYGHVIRDILLVSAMCIFF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=331389 EJF26_RS08645 WP_004246590.1 1687802..1688425(+) (comM) [Streptococcus oralis subsp. dentisani strain F0392]
ATGATAAAATCAATTCGTATCTTATTGTTACTAGCTTTGATCCAGATTAGTTTAAGTAGCTGCTTGCTGTGGAAGGGAAC
CATCTTAACCTTAAAGCAATCAAGCGCCTATTTTCTAGTGTTTATCGTATTGGCATCAGGTCTGTGCGCGGGGATGAATT
TCTTTTATACCCAAAATCAGGATGTTCATAGCATTATAAACAGTCAGAAAAAAGTGAAACTATTTTATAGTACCTTGTTG
GTCTTAAACCTAGTAGGTGTCTGTCTTGTGTTGTCGGAGACTATCTTAACACAGACAGCTTTTCAGAAAGAGTTGGTAGA
CCTTTTCTTGCCTTCCTTCTTTTTCTTGTTTGGCATTGATTTACTTGTTTTTTTACCGTTTGAAAAATACAGCCGAGATT
TGGGAGCCACTCTCAATAAGAAAAAAACAGTTGTCCTGACAGTTCTGGCAACCTTGCTGTTCTTGAGAAATCCAATGACA
GTTTTATCCATTGTTTTTTATGTCGGTTTAGGCTTCGTTTTTGCTCGTTTTTTATTTCCAAAATCTATGAGAAGAGAATT
TTCCTTTTACGGGCATGTAATCCGAGATATTTTACTTGTTAGCGCCATGTGTATATTCTTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

59.709

99.517

0.594
  comM Streptococcus pneumoniae R6

59.709

99.517

0.594
  comM Streptococcus pneumoniae TIGR4

59.709

99.517

0.594
  comM Streptococcus mitis SK321

44.162

95.169

0.42
  comM Streptococcus mitis NCTC 12261

43.655

95.169

0.415

Multiple sequence alignment