Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EJO50_RS11235 Genome accession   NZ_CP034433
Coordinates   2601461..2602684 (+) Length   407 a.a.
NCBI ID   WP_125974225.1    Uniprot ID   A0A3S8ZU90
Organism   Iodobacter ciconiae strain H11R3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2596461..2607684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJO50_RS11220 (EJO50_11220) - 2597457..2598305 (+) 849 WP_125974219.1 inner membrane protein YpjD -
  EJO50_RS11225 (EJO50_11225) - 2598437..2599621 (+) 1185 WP_233702057.1 HlyC/CorC family transporter -
  EJO50_RS11230 (EJO50_11230) pilB 2599733..2601442 (+) 1710 WP_125974223.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EJO50_RS11235 (EJO50_11235) pilC 2601461..2602684 (+) 1224 WP_125974225.1 type II secretion system F family protein Machinery gene
  EJO50_RS11240 (EJO50_11240) pilD 2602684..2603547 (+) 864 WP_125974227.1 A24 family peptidase Machinery gene
  EJO50_RS11245 (EJO50_11245) coaE 2603547..2604173 (+) 627 WP_233702058.1 dephospho-CoA kinase -
  EJO50_RS11250 (EJO50_11250) zapD 2604234..2604992 (+) 759 WP_125974229.1 cell division protein ZapD -
  EJO50_RS11255 (EJO50_11255) - 2604989..2605180 (+) 192 WP_125974231.1 DNA gyrase inhibitor YacG -
  EJO50_RS17780 (EJO50_11260) - 2605387..2605563 (+) 177 WP_373280514.1 GNAT family N-acyltransferase -
  EJO50_RS17785 - 2605505..2605630 (+) 126 WP_373280532.1 GNAT family N-acetyltransferase -
  EJO50_RS11265 (EJO50_11265) - 2605887..2606609 (+) 723 WP_164521492.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  EJO50_RS11270 (EJO50_11270) - 2606591..2607412 (-) 822 WP_125974235.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44568.82 Da        Isoelectric Point: 9.7985

>NTDB_id=331219 EJO50_RS11235 WP_125974225.1 2601461..2602684(+) (pilC) [Iodobacter ciconiae strain H11R3]
MALAPKTLKVKEFTFIWEGKDRSGKVVKGEVRASGEHVVKNALRRQGINVLKIKKQRTGTGKKITEEDITMFTRQLATML
KSGVPLLTAFDIVAKGHNNPSVTKLLMDIKNDIETGLSLTQAFRKHPNEFDTLYCNLIQAGEQAGILDALLARLATYKEK
TLGVKKKIKSALFYPTAIIVAAFVITAVIMIFVIPAFKELFSSFGANLPTPTLVVMAISDVFVTYWWLIFGGIFGGIWSF
LKAWKKSEAIQIVMDRLLLKIPVIGKIMLDATIARWCRTLSTMFAAGVPLVDSLDSVGGAAGNYLYKLATKKIQTEVSTG
TSLTLSMQSTNMFPNMVMQMVAIGEESGALDSMLSKVADYYEEEVDNAVEALSSLMEPVIMVVLGTLIGGLVVAMYLPIF
KMGEVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=331219 EJO50_RS11235 WP_125974225.1 2601461..2602684(+) (pilC) [Iodobacter ciconiae strain H11R3]
ATGGCGCTAGCACCTAAAACACTCAAAGTAAAAGAGTTTACTTTTATCTGGGAAGGGAAAGATCGCAGTGGTAAGGTTGT
CAAAGGCGAGGTACGGGCCAGCGGTGAACACGTGGTTAAAAACGCGTTACGCCGCCAAGGCATTAATGTCTTAAAAATAA
AGAAGCAGAGGACAGGCACAGGCAAGAAAATTACTGAGGAAGACATTACCATGTTTACTCGGCAACTTGCCACCATGCTT
AAATCAGGTGTACCGCTCCTTACCGCATTTGATATCGTTGCCAAGGGGCATAACAATCCATCCGTAACAAAGCTACTTAT
GGATATCAAAAATGATATTGAAACAGGCTTGTCGCTCACCCAGGCATTTAGGAAACACCCAAATGAGTTTGATACGCTTT
ATTGCAATCTGATTCAGGCGGGTGAGCAAGCTGGTATTTTAGATGCTCTACTGGCCCGGCTCGCCACGTACAAAGAAAAA
ACGTTAGGTGTTAAAAAGAAAATCAAATCTGCACTATTTTATCCAACGGCCATTATCGTTGCCGCGTTTGTAATTACCGC
AGTGATTATGATTTTTGTTATTCCAGCATTTAAAGAATTATTTTCCAGTTTTGGAGCCAACTTACCAACGCCGACCTTGG
TGGTAATGGCTATTTCCGATGTATTTGTGACCTATTGGTGGCTTATATTTGGCGGAATATTTGGCGGAATTTGGAGCTTC
TTAAAAGCATGGAAAAAATCTGAGGCCATCCAGATAGTAATGGATCGCTTATTGCTCAAGATTCCAGTTATTGGAAAAAT
CATGCTGGATGCCACTATCGCACGCTGGTGCCGCACTCTTTCAACCATGTTTGCCGCAGGGGTACCTTTAGTAGACTCGC
TGGATTCTGTCGGTGGTGCCGCAGGAAATTACCTCTATAAGCTTGCCACCAAAAAAATTCAAACGGAAGTAAGCACAGGA
ACCAGCCTCACTTTATCCATGCAAAGCACCAATATGTTTCCCAATATGGTGATGCAAATGGTAGCAATTGGTGAAGAGTC
AGGGGCATTGGATTCCATGCTTAGTAAAGTTGCTGACTATTATGAAGAAGAAGTAGATAACGCTGTAGAAGCCTTATCCA
GTCTAATGGAGCCCGTTATTATGGTGGTCTTGGGTACGCTGATTGGTGGCCTGGTTGTTGCAATGTACCTGCCAATTTTC
AAGATGGGCGAGGTTGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S8ZU90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.266

97.789

0.521
  pilG Neisseria gonorrhoeae MS11

52.897

97.543

0.516
  pilG Neisseria meningitidis 44/76-A

52.261

97.789

0.511
  pilC Pseudomonas stutzeri DSM 10701

51.5

98.28

0.506
  pilC Acinetobacter baumannii D1279779

50

97.789

0.489
  pilC Acinetobacter baylyi ADP1

49.874

97.543

0.486
  pilC Vibrio cholerae strain A1552

39.853

100

0.4
  pilC Vibrio campbellii strain DS40M4

37.621

100

0.381

Multiple sequence alignment