Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | EJO50_RS11240 | Genome accession | NZ_CP034433 |
| Coordinates | 2602684..2603547 (+) | Length | 287 a.a. |
| NCBI ID | WP_125974227.1 | Uniprot ID | A0A3S8ZU67 |
| Organism | Iodobacter ciconiae strain H11R3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2597684..2608547
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EJO50_RS11225 (EJO50_11225) | - | 2598437..2599621 (+) | 1185 | WP_233702057.1 | HlyC/CorC family transporter | - |
| EJO50_RS11230 (EJO50_11230) | pilB | 2599733..2601442 (+) | 1710 | WP_125974223.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EJO50_RS11235 (EJO50_11235) | pilC | 2601461..2602684 (+) | 1224 | WP_125974225.1 | type II secretion system F family protein | Machinery gene |
| EJO50_RS11240 (EJO50_11240) | pilD | 2602684..2603547 (+) | 864 | WP_125974227.1 | A24 family peptidase | Machinery gene |
| EJO50_RS11245 (EJO50_11245) | coaE | 2603547..2604173 (+) | 627 | WP_233702058.1 | dephospho-CoA kinase | - |
| EJO50_RS11250 (EJO50_11250) | zapD | 2604234..2604992 (+) | 759 | WP_125974229.1 | cell division protein ZapD | - |
| EJO50_RS11255 (EJO50_11255) | - | 2604989..2605180 (+) | 192 | WP_125974231.1 | DNA gyrase inhibitor YacG | - |
| EJO50_RS17780 (EJO50_11260) | - | 2605387..2605563 (+) | 177 | WP_373280514.1 | GNAT family N-acyltransferase | - |
| EJO50_RS17785 | - | 2605505..2605630 (+) | 126 | WP_373280532.1 | GNAT family N-acetyltransferase | - |
| EJO50_RS11265 (EJO50_11265) | - | 2605887..2606609 (+) | 723 | WP_164521492.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| EJO50_RS11270 (EJO50_11270) | - | 2606591..2607412 (-) | 822 | WP_125974235.1 | symmetrical bis(5'-nucleosyl)-tetraphosphatase | - |
| EJO50_RS11275 (EJO50_11275) | - | 2607473..2608357 (+) | 885 | WP_164521493.1 | HDOD domain-containing protein | - |
Sequence
Protein
Download Length: 287 a.a. Molecular weight: 31206.48 Da Isoelectric Point: 7.5852
>NTDB_id=331220 EJO50_RS11240 WP_125974227.1 2602684..2603547(+) (pilD) [Iodobacter ciconiae strain H11R3]
MIELFLDSPAIFGSFLFILGLLVGSFLNVVIHRIPKIMEQQFRQECQLIDAPVDAPMPQTPTYNLVVPRSACPSCGHAIS
ALENIPVISYLVLRGRCRGCKTPISPRYPMVELLCAVLTTIAGLHFGVTITAIAAIMLTWFLIALVFIDADTYLLPDNIT
LPLLWLGLLFNLNNVFVPLDQAVIGAIAGYLLLWGVYWLFKLITGKEGMGYGDFKLLAALGAWFGWQALPSIILLSSVSG
AIIGIALAILAKRGMGKPMPFGPYLSIAGWLTLLIGSSLQQLLYIAA
MIELFLDSPAIFGSFLFILGLLVGSFLNVVIHRIPKIMEQQFRQECQLIDAPVDAPMPQTPTYNLVVPRSACPSCGHAIS
ALENIPVISYLVLRGRCRGCKTPISPRYPMVELLCAVLTTIAGLHFGVTITAIAAIMLTWFLIALVFIDADTYLLPDNIT
LPLLWLGLLFNLNNVFVPLDQAVIGAIAGYLLLWGVYWLFKLITGKEGMGYGDFKLLAALGAWFGWQALPSIILLSSVSG
AIIGIALAILAKRGMGKPMPFGPYLSIAGWLTLLIGSSLQQLLYIAA
Nucleotide
Download Length: 864 bp
>NTDB_id=331220 EJO50_RS11240 WP_125974227.1 2602684..2603547(+) (pilD) [Iodobacter ciconiae strain H11R3]
ATGATTGAATTGTTTTTAGACAGCCCTGCTATCTTTGGTAGTTTTTTATTCATACTGGGTCTTTTAGTCGGAAGTTTTTT
GAATGTAGTGATTCACCGCATTCCTAAAATAATGGAGCAACAATTCAGACAGGAGTGTCAGCTGATTGATGCCCCTGTCG
ATGCTCCAATGCCACAGACTCCAACCTATAACCTAGTGGTCCCACGTTCTGCCTGCCCAAGCTGCGGCCACGCTATCAGT
GCTTTGGAAAATATTCCAGTTATTAGCTATTTAGTTTTACGCGGGCGCTGCAGAGGTTGTAAAACGCCCATCAGCCCTCG
CTATCCAATGGTTGAGCTTCTTTGCGCAGTACTCACTACCATTGCGGGCCTGCATTTTGGTGTAACAATCACGGCAATTG
CTGCGATTATGCTGACTTGGTTCCTCATTGCATTGGTGTTTATTGATGCAGATACCTACCTCCTGCCCGATAACATTACC
TTACCTCTACTTTGGCTAGGCTTACTTTTCAATTTAAACAATGTATTTGTACCGCTAGATCAAGCAGTGATCGGTGCTAT
TGCGGGCTACCTGTTGCTCTGGGGCGTGTATTGGCTATTCAAGCTCATCACAGGAAAAGAAGGCATGGGCTACGGCGACT
TTAAACTACTCGCCGCACTAGGCGCCTGGTTTGGATGGCAAGCCTTACCCAGTATTATTTTACTATCATCAGTCAGCGGA
GCCATTATCGGCATTGCACTTGCCATACTTGCTAAACGGGGCATGGGTAAGCCGATGCCATTTGGCCCTTATTTAAGTAT
TGCCGGCTGGTTGACTTTACTAATTGGCAGTTCATTACAACAACTTTTGTATATAGCAGCATAA
ATGATTGAATTGTTTTTAGACAGCCCTGCTATCTTTGGTAGTTTTTTATTCATACTGGGTCTTTTAGTCGGAAGTTTTTT
GAATGTAGTGATTCACCGCATTCCTAAAATAATGGAGCAACAATTCAGACAGGAGTGTCAGCTGATTGATGCCCCTGTCG
ATGCTCCAATGCCACAGACTCCAACCTATAACCTAGTGGTCCCACGTTCTGCCTGCCCAAGCTGCGGCCACGCTATCAGT
GCTTTGGAAAATATTCCAGTTATTAGCTATTTAGTTTTACGCGGGCGCTGCAGAGGTTGTAAAACGCCCATCAGCCCTCG
CTATCCAATGGTTGAGCTTCTTTGCGCAGTACTCACTACCATTGCGGGCCTGCATTTTGGTGTAACAATCACGGCAATTG
CTGCGATTATGCTGACTTGGTTCCTCATTGCATTGGTGTTTATTGATGCAGATACCTACCTCCTGCCCGATAACATTACC
TTACCTCTACTTTGGCTAGGCTTACTTTTCAATTTAAACAATGTATTTGTACCGCTAGATCAAGCAGTGATCGGTGCTAT
TGCGGGCTACCTGTTGCTCTGGGGCGTGTATTGGCTATTCAAGCTCATCACAGGAAAAGAAGGCATGGGCTACGGCGACT
TTAAACTACTCGCCGCACTAGGCGCCTGGTTTGGATGGCAAGCCTTACCCAGTATTATTTTACTATCATCAGTCAGCGGA
GCCATTATCGGCATTGCACTTGCCATACTTGCTAAACGGGGCATGGGTAAGCCGATGCCATTTGGCCCTTATTTAAGTAT
TGCCGGCTGGTTGACTTTACTAATTGGCAGTTCATTACAACAACTTTTGTATATAGCAGCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
54.48 |
97.213 |
0.53 |
| pilD | Vibrio cholerae strain A1552 |
53.047 |
97.213 |
0.516 |
| pilD | Acinetobacter baumannii D1279779 |
52.453 |
92.334 |
0.484 |
| pilD | Acinetobacter nosocomialis M2 |
51.698 |
92.334 |
0.477 |
| pilD | Neisseria gonorrhoeae MS11 |
48.496 |
92.683 |
0.449 |