Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EIY89_RS02200 Genome accession   NZ_CP034246
Coordinates   464837..466105 (-) Length   422 a.a.
NCBI ID   WP_190534339.1    Uniprot ID   -
Organism   Shewanella algae strain VGH117     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 459837..471105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIY89_RS02170 (EIY89_02165) - 461515..461778 (-) 264 Protein_403 transposase -
  EIY89_RS02175 (EIY89_02170) mutT 461849..462247 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  EIY89_RS02180 (EIY89_02175) yacG 462247..462459 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  EIY89_RS02185 (EIY89_02180) zapD 462504..463244 (-) 741 WP_028779562.1 cell division protein ZapD -
  EIY89_RS02190 (EIY89_02185) coaE 463241..463852 (-) 612 WP_025012056.1 dephospho-CoA kinase -
  EIY89_RS02195 (EIY89_02190) pilD 463853..464767 (-) 915 WP_190534336.1 A24 family peptidase Machinery gene
  EIY89_RS02200 (EIY89_02195) pilC 464837..466105 (-) 1269 WP_190534339.1 type II secretion system F family protein Machinery gene
  EIY89_RS02205 (EIY89_02200) pilB 466266..467972 (-) 1707 WP_190534342.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EIY89_RS02210 (EIY89_02205) pilA/pilAI 468042..468488 (-) 447 WP_190534345.1 pilin Machinery gene
  EIY89_RS02215 (EIY89_02210) nadC 469357..470217 (-) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EIY89_RS02220 (EIY89_02215) ampD 470376..470954 (+) 579 WP_144159901.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46015.34 Da        Isoelectric Point: 10.2777

>NTDB_id=330185 EIY89_RS02200 WP_190534339.1 464837..466105(-) (pilC) [Shewanella algae strain VGH117]
MATATATAKNNKAKNKGTKPQPKIHTFTWKGLNRDGKQSSGELRGASIAEIKTLLKSQGINPKTVRKKSVSLLGGDKKIK
PMDIAVITRQIATMLAAGVPLVTSIELIARGHEKNKVRVLLGTVLADVQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSG
SLDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTVLLLLFVVPQFEEIFRGFGAELPAFTQMIVNISRWLQGT
WYLFLAGIVIGIWLFVRAHRNSESFRNRIDEMVLKIPLIGEILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYV
YRKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIG
TLVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=330185 EIY89_RS02200 WP_190534339.1 464837..466105(-) (pilC) [Shewanella algae strain VGH117]
ATGGCCACCGCAACGGCGACAGCAAAAAACAATAAAGCCAAAAATAAAGGCACTAAGCCCCAGCCCAAGATCCATACCTT
TACCTGGAAGGGACTCAATCGTGACGGTAAGCAAAGCTCAGGCGAATTACGCGGTGCAAGCATAGCCGAAATCAAGACCT
TGCTTAAGAGCCAGGGCATCAATCCCAAGACAGTTCGTAAAAAGTCTGTTTCACTCTTAGGTGGTGATAAAAAAATCAAA
CCTATGGATATCGCGGTGATCACCCGTCAGATAGCCACTATGCTGGCTGCCGGCGTGCCACTGGTTACTTCCATCGAATT
AATAGCTCGCGGCCATGAAAAAAACAAGGTGCGGGTACTACTAGGTACTGTATTGGCTGATGTCCAAGCCGGTATTCCAC
TCTCAGATGCCCTTCGTCCACACAGAGTCTATTTTGACGACCTCTATGTCGACTTGGTGGCCGCCGGTGAACATTCAGGC
TCTCTGGATGCCGTATTCGACCGTATCGCCACCTATAGGGAAAAAGCTGAAGCCCTCAAGTCAAAAATCAAGAAAGCCAT
GTTCTACCCCGCTGCAGTGGTAGTAGTTGCCATAGCCGTTACTGTACTGTTGCTTTTGTTTGTAGTGCCTCAATTTGAAG
AAATCTTTAGAGGGTTTGGTGCCGAATTACCCGCCTTTACCCAAATGATCGTCAATATCAGCCGCTGGCTGCAAGGCACT
TGGTACCTATTTTTAGCAGGCATAGTAATTGGCATCTGGCTCTTTGTTCGCGCTCATCGAAATTCAGAAAGTTTCCGTAA
CCGTATCGATGAAATGGTACTTAAGATCCCTTTGATTGGTGAAATTCTTCATAAAGGTGCCATGGCCCGTTTTGCCCGCA
CTCTGGCCACCACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCTTGGAGTCTGCCGCCGGTGCATCCGGCAACTATGTC
TACCGCAAGGCGCTGTTAAATGTGCGTACCGAAGTAATGGCCGGGATGCAGATGAATGTGGCCATGCGCACTACCAAGCT
ATTCCCCGATATGTTGATCCAGATGGTGATGATAGGTGAAGAGTCCGGCTCATTGGATAACATGCTCAACAAGATTGCCA
ATATCTACGAGATGCAGGTAGACGATGCCGTAGATGGCCTCTCCAGCTTGATAGAACCTATTATGATGGTAGTTATCGGC
ACTCTGGTTGGTGGCCTAATCGTAGGCATGTACCTACCTATCTTCCAGATGGGTAACGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.391

94.55

0.533
  pilC Acinetobacter baylyi ADP1

50

96.682

0.483
  pilC Acinetobacter baumannii D1279779

49.246

94.313

0.464
  pilC Legionella pneumophila strain ERS1305867

48.267

95.735

0.462
  pilC Vibrio cholerae strain A1552

46.455

96.919

0.45
  pilC Vibrio campbellii strain DS40M4

45.161

95.498

0.431
  pilG Neisseria gonorrhoeae MS11

41.363

97.393

0.403
  pilG Neisseria meningitidis 44/76-A

41.262

97.63

0.403

Multiple sequence alignment