Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EGC82_RS02930 Genome accession   NZ_CP034015
Coordinates   637292..638554 (-) Length   420 a.a.
NCBI ID   WP_124729418.1    Uniprot ID   A0A3G8LSG1
Organism   Shewanella livingstonensis strain LMG 19866     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 632292..643554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGC82_RS02895 (EGC82_02895) - 632533..633504 (+) 972 Protein_551 IS630 family transposase -
  EGC82_RS02900 (EGC82_02900) - 633572..634105 (-) 534 Protein_552 IS630 family transposase -
  EGC82_RS02905 (EGC82_02905) mutT 634290..634688 (-) 399 WP_124729413.1 8-oxo-dGTP diphosphatase MutT -
  EGC82_RS02910 (EGC82_02910) yacG 634725..634937 (-) 213 WP_124729414.1 DNA gyrase inhibitor YacG -
  EGC82_RS02915 (EGC82_02915) zapD 634980..635714 (-) 735 WP_124729415.1 cell division protein ZapD -
  EGC82_RS02920 (EGC82_02920) coaE 635707..636336 (-) 630 WP_124729416.1 dephospho-CoA kinase -
  EGC82_RS02925 (EGC82_02925) pilD 636333..637259 (-) 927 WP_124729417.1 A24 family peptidase Machinery gene
  EGC82_RS02930 (EGC82_02930) pilC 637292..638554 (-) 1263 WP_124729418.1 type II secretion system F family protein Machinery gene
  EGC82_RS02935 (EGC82_02935) pilB 638687..640393 (-) 1707 WP_124729419.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EGC82_RS02940 (EGC82_02940) pilA/pilAI 640497..640940 (-) 444 WP_124729420.1 pilin Machinery gene
  EGC82_RS02945 (EGC82_02945) nadC 641932..642810 (-) 879 WP_124729421.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46153.37 Da        Isoelectric Point: 10.2081

>NTDB_id=328005 EGC82_RS02930 WP_124729418.1 637292..638554(-) (pilC) [Shewanella livingstonensis strain LMG 19866]
MATAAVKRKAKVKKTIKHQPKVFTYQWKGVNRDGQRTSGELKGSTIAEIRSVLKAQGVTPKGVRKKSAPLWKSEKSITAM
DIAMMTRQIATMLSAGVPLVTTIELLGRGHEKAKMRELLGTILSDVQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGSL
DAVFDRVATYREKAEQLKSKIKKAMFYPAAVVVVAFAVTALLLLFVVPQFEDIFKGFGAELPAFTQMIINLSRWLQSSWY
YFAIAIIAGIWLFRRTHRNSQAFRDRVDVAVLKIPAIGDILHKASMARFARTLATTFAAGVPLIDGLESAAGASGNYVYR
KALLKVRQEVMAGMQMNVAMLTTGLFPDMLIQMVMIGEESGGLDEMLNKVSNIYEMQVDDAVDGLSSLIEPVMMVVIGTV
VGGLIIGMYLPIFEMGNIVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=328005 EGC82_RS02930 WP_124729418.1 637292..638554(-) (pilC) [Shewanella livingstonensis strain LMG 19866]
ATGGCCACTGCAGCAGTAAAAAGAAAAGCGAAGGTAAAAAAGACTATCAAACACCAACCTAAGGTGTTTACTTACCAATG
GAAGGGTGTTAATCGTGATGGTCAACGTACTTCTGGTGAGTTGAAAGGCTCCACGATTGCTGAAATTCGTAGTGTGTTAA
AAGCCCAAGGTGTCACACCTAAGGGCGTACGTAAAAAATCGGCCCCTTTGTGGAAGTCTGAAAAAAGTATCACCGCGATG
GACATTGCGATGATGACTCGTCAAATTGCTACAATGTTGTCTGCGGGCGTCCCGCTTGTGACTACTATTGAATTATTGGG
TAGAGGTCATGAAAAGGCTAAAATGCGCGAATTATTGGGCACTATTTTATCTGATGTTCAATCAGGTATTCCACTTTCCG
ATGCATTAAGGCCGCACCGACGCTATTTTGATGATTTATATGTCGACTTAGTCGCTGCTGGTGAACATTCAGGCTCACTA
GATGCCGTATTTGATCGCGTAGCGACATATCGAGAAAAAGCAGAGCAATTAAAATCTAAAATAAAAAAAGCCATGTTTTA
TCCGGCGGCTGTTGTCGTAGTTGCTTTTGCCGTAACTGCACTACTACTATTATTTGTAGTGCCTCAGTTTGAAGATATTT
TTAAAGGGTTTGGTGCAGAATTACCAGCTTTTACTCAAATGATTATAAACTTATCCCGCTGGCTACAGTCGTCATGGTAT
TACTTCGCTATTGCAATTATTGCGGGTATTTGGCTATTTAGACGAACACATAGAAATTCACAGGCATTCCGAGATCGAGT
GGATGTTGCGGTTCTAAAGATTCCTGCCATAGGCGATATTCTTCACAAAGCTTCAATGGCTCGTTTTGCGCGTACTTTAG
CCACAACATTCGCAGCAGGTGTACCATTAATCGATGGTTTAGAGTCTGCTGCTGGGGCATCTGGTAATTATGTCTACCGT
AAAGCATTGCTAAAAGTTCGCCAGGAAGTGATGGCAGGTATGCAAATGAATGTCGCTATGCTCACCACTGGCTTGTTTCC
AGACATGTTAATTCAAATGGTAATGATTGGTGAAGAATCTGGCGGCTTAGATGAGATGCTTAATAAAGTATCAAACATTT
ATGAAATGCAAGTTGATGACGCTGTCGATGGGCTATCAAGCCTAATAGAACCCGTTATGATGGTAGTAATTGGCACTGTT
GTAGGCGGTTTGATCATCGGCATGTATTTACCTATTTTCGAAATGGGTAATATTGTCGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(86-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8LSG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.317

96.905

0.517
  pilC Acinetobacter baylyi ADP1

50

95.238

0.476
  pilC Acinetobacter baumannii D1279779

50.251

94.762

0.476
  pilC Legionella pneumophila strain ERS1305867

47.772

96.19

0.46
  pilC Vibrio cholerae strain A1552

47.739

94.762

0.452
  pilC Vibrio campbellii strain DS40M4

44.776

95.714

0.429
  pilG Neisseria meningitidis 44/76-A

40.299

95.714

0.386
  pilG Neisseria gonorrhoeae MS11

40.299

95.714

0.386

Multiple sequence alignment