Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FNV59_RS21475 Genome accession   NZ_CP041650
Coordinates   4681914..4682519 (-) Length   201 a.a.
NCBI ID   WP_054231895.1    Uniprot ID   A0ABU3UTY5
Organism   Streptomyces sp. RLB1-8     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4676914..4687519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV59_RS21460 (FNV59_21780) - 4678545..4679543 (+) 999 WP_143601634.1 hypothetical protein -
  FNV59_RS21465 (FNV59_21785) clpX 4679637..4680923 (-) 1287 WP_054231969.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  FNV59_RS21470 (FNV59_21790) clpP 4681095..4681775 (-) 681 WP_060897739.1 ATP-dependent Clp protease proteolytic subunit Regulator
  FNV59_RS21475 (FNV59_21795) clpP 4681914..4682519 (-) 606 WP_054231895.1 ATP-dependent Clp protease proteolytic subunit Regulator
  FNV59_RS21480 (FNV59_21800) tig 4682949..4684355 (-) 1407 WP_060897740.1 trigger factor -
  FNV59_RS53185 - 4685239..4685412 (-) 174 WP_169081042.1 hypothetical protein -
  FNV59_RS21495 (FNV59_21815) - 4685540..4685857 (-) 318 WP_240362254.1 TMEM175 family protein -
  FNV59_RS21500 (FNV59_21820) - 4686112..4686306 (-) 195 WP_054231893.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21293.23 Da        Isoelectric Point: 4.6747

>NTDB_id=327637 FNV59_RS21475 WP_054231895.1 4681914..4682519(-) (clpP) [Streptomyces sp. RLB1-8]
MPTAAGEPFGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ
ITRDSDRDRWFDPIEAKEYGLIDDIVPTAAGMPGGGGTGAS

Nucleotide


Download         Length: 606 bp        

>NTDB_id=327637 FNV59_RS21475 WP_054231895.1 4681914..4682519(-) (clpP) [Streptomyces sp. RLB1-8]
ATGCCCACAGCTGCCGGCGAACCCTTCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGATGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCGCCGACCCGGACA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC
AAGAACGACGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGTCAGTTCCTGCTCAGCGCGGGCACCCCCGGCAA
GCGCTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCGGCCGGCCTCGCGGGTTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCCGAGCTGACCTCCTTCCACACCGGTCAGACGGTCGAGCAG
ATCACTCGTGACTCGGACCGCGACCGTTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCGTGCC
CACCGCTGCTGGTATGCCGGGCGGTGGCGGCACCGGGGCGTCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.684

93.035

0.527
  clpP Lactococcus lactis subsp. cremoris KW2

52.381

94.03

0.493
  clpP Streptococcus mutans UA159

51.852

94.03

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

94.03

0.488
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.023

86.567

0.468
  clpP Streptococcus pyogenes MGAS315

49.206

94.03

0.463
  clpP Streptococcus pyogenes JRS4

49.206

94.03

0.463
  clpP Streptococcus thermophilus LMG 18311

48.677

94.03

0.458
  clpP Streptococcus thermophilus LMD-9

48.677

94.03

0.458
  clpP Streptococcus pneumoniae Rx1

48.148

94.03

0.453
  clpP Streptococcus pneumoniae D39

48.148

94.03

0.453
  clpP Streptococcus pneumoniae R6

48.148

94.03

0.453
  clpP Streptococcus pneumoniae TIGR4

48.148

94.03

0.453

Multiple sequence alignment