NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	FNV66_RS21060	Genome accession	NZ_CP041607
Coordinates	4300876..4301481 (-)	Length	201 a.a.
NCBI ID	WP_054231895.1	Uniprot ID	A0ABU3UTY5
Organism	Streptomyces sp. S1D4-14
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4295876..4306481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNV66_RS21045 (FNV66_21285)	-	4297507..4298505 (+)	999	WP_143601634.1	hypothetical protein	-
FNV66_RS21050 (FNV66_21290)	clpX	4298599..4299885 (-)	1287	WP_054231969.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FNV66_RS21055 (FNV66_21295)	clpP	4300057..4300737 (-)	681	WP_060897739.1	ATP-dependent Clp protease proteolytic subunit	Regulator
FNV66_RS21060 (FNV66_21300)	clpP	4300876..4301481 (-)	606	WP_054231895.1	ATP-dependent Clp protease proteolytic subunit	Regulator
FNV66_RS21065 (FNV66_21305)	tig	4301911..4303317 (-)	1407	WP_060897740.1	trigger factor	-
FNV66_RS21080	-	4304201..4304374 (-)	174	WP_169081042.1	hypothetical protein	-
FNV66_RS21085 (FNV66_21320)	-	4304502..4304819 (-)	318	WP_240362254.1	TMEM175 family protein	-
FNV66_RS21090 (FNV66_21325)	-	4305074..4305268 (-)	195	WP_054231893.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 21293.23 Da Isoelectric Point: 4.6747

                                >NTDB_id=327103 FNV66_RS21060 WP_054231895.1 4300876..4301481(-) (clpP) [Streptomyces sp. S1D4-14]

MPTAAGEPFGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI

KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ

ITRDSDRDRWFDPIEAKEYGLIDDIVPTAAGMPGGGGTGAS

Nucleotide

Download Length: 606 bp

                                >NTDB_id=327103 FNV66_RS21060 WP_054231895.1 4300876..4301481(-) (clpP) [Streptomyces sp. S1D4-14]

ATGCCCACAGCTGCCGGCGAACCCTTCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGATCAT

CTTCCTCGGCCAGGCGGTCGACGATGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCGCCGACCCGGACA

AGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC

AAGAACGACGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGTCAGTTCCTGCTCAGCGCGGGCACCCCCGGCAA

GCGCTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCGGCCGGCCTCGCGGGTTCCGCGTCGGACATCAAGA

TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCCGAGCTGACCTCCTTCCACACCGGTCAGACGGTCGAGCAG

ATCACTCGTGACTCGGACCGCGACCGTTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCGTGCC

CACCGCTGCTGGTATGCCGGGCGGTGGCGGCACCGGGGCGTCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	56.684	93.035	0.527
clpP	Lactococcus lactis subsp. cremoris KW2	52.381	94.03	0.493
clpP	Streptococcus mutans UA159	51.852	94.03	0.488
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.852	94.03	0.488
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.023	86.567	0.468
clpP	Streptococcus pyogenes MGAS315	49.206	94.03	0.463
clpP	Streptococcus pyogenes JRS4	49.206	94.03	0.463
clpP	Streptococcus thermophilus LMG 18311	48.677	94.03	0.458
clpP	Streptococcus thermophilus LMD-9	48.677	94.03	0.458
clpP	Streptococcus pneumoniae Rx1	48.148	94.03	0.453
clpP	Streptococcus pneumoniae D39	48.148	94.03	0.453
clpP	Streptococcus pneumoniae R6	48.148	94.03	0.453
clpP	Streptococcus pneumoniae TIGR4	48.148	94.03	0.453

Detailed information NTG0327103