Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EGY13_RS18730 Genome accession   NZ_CP033858
Coordinates   3773604..3774830 (+) Length   408 a.a.
NCBI ID   WP_000279221.1    Uniprot ID   -
Organism   Acinetobacter sp. FDAARGOS_493     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3768604..3779830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY13_RS18695 (EGY13_18705) rimP 3769269..3769793 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  EGY13_RS18715 (EGY13_18725) secG 3770435..3770764 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  EGY13_RS18720 (EGY13_18730) tpiA 3770777..3771571 (-) 795 WP_000016932.1 triose-phosphate isomerase -
  EGY13_RS18725 (EGY13_18735) pilB 3771862..3773574 (+) 1713 WP_001274988.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EGY13_RS18730 (EGY13_18740) pilC 3773604..3774830 (+) 1227 WP_000279221.1 type II secretion system F family protein Machinery gene
  EGY13_RS20015 (EGY13_18745) pilD 3774830..3775690 (+) 861 WP_001152274.1 prepilin peptidase Machinery gene
  EGY13_RS18740 (EGY13_18750) coaE 3775692..3776288 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  EGY13_RS18745 (EGY13_18755) - 3776285..3777199 (-) 915 WP_000075013.1 DMT family transporter -
  EGY13_RS18750 (EGY13_18760) rlmB 3777235..3777984 (-) 750 WP_001118148.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EGY13_RS18755 (EGY13_18765) - 3778086..3778412 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  EGY13_RS18760 (EGY13_18770) - 3778489..3779799 (-) 1311 WP_000753284.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44937.46 Da        Isoelectric Point: 9.9566

>NTDB_id=326476 EGY13_RS18730 WP_000279221.1 3773604..3774830(+) (pilC) [Acinetobacter sp. FDAARGOS_493]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKSMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLVLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=326476 EGY13_RS18730 WP_000279221.1 3773604..3774830(+) (pilC) [Acinetobacter sp. FDAARGOS_493]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAGCATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAATTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCAGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGTGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.265

100

0.993
  pilC Acinetobacter baylyi ADP1

86.029

100

0.86
  pilC Pseudomonas stutzeri DSM 10701

60

99.265

0.596
  pilC Legionella pneumophila strain ERS1305867

54.074

99.265

0.537
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

47.236

97.549

0.461
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment