Detailed information NTG0326482

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EGY13_RS20015
• Genome accession: NZ_CP033858
• Coordinates: 3774830..3775690 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152274.1
• Uniprot ID: A0AAP1QVT1
• Organism: Acinetobacter sp. FDAARGOS_493
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3769830..3780690

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGY13_RS18715 (EGY13_18725)	secG	3770435..3770764 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
EGY13_RS18720 (EGY13_18730)	tpiA	3770777..3771571 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
EGY13_RS18725 (EGY13_18735)	pilB	3771862..3773574 (+)	1713	WP_001274988.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EGY13_RS18730 (EGY13_18740)	pilC	3773604..3774830 (+)	1227	WP_000279221.1	type II secretion system F family protein	Machinery gene
EGY13_RS20015 (EGY13_18745)	pilD	3774830..3775690 (+)	861	WP_001152274.1	prepilin peptidase	Machinery gene
EGY13_RS18740 (EGY13_18750)	coaE	3775692..3776288 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
EGY13_RS18745 (EGY13_18755)	-	3776285..3777199 (-)	915	WP_000075013.1	DMT family transporter	-
EGY13_RS18750 (EGY13_18760)	rlmB	3777235..3777984 (-)	750	WP_001118148.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
EGY13_RS18755 (EGY13_18765)	-	3778086..3778412 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
EGY13_RS18760 (EGY13_18770)	-	3778489..3779799 (-)	1311	WP_000753284.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32078.49 Da
• Isoelectric Point: 7.1041

>NTDB_id=326482 EGY13_RS20015 WP_001152274.1 3774830..3775690(+) (pilD) [Acinetobacter sp. FDAARGOS_493]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=326482 EGY13_RS20015 WP_001152274.1 3774830..3775690(+) (pilD) [Acinetobacter sp. FDAARGOS_493]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434