Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EGX72_RS02745 | Genome accession | NZ_CP033809 |
| Coordinates | 477945..478361 (+) | Length | 138 a.a. |
| NCBI ID | WP_000609565.1 | Uniprot ID | Q8DXI7 |
| Organism | Streptococcus sp. FDAARGOS_521 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 466006..501798 | 477945..478361 | within | 0 |
Gene organization within MGE regions
Location: 466006..501798
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX72_RS02640 (EGX72_02635) | - | 466006..467073 (-) | 1068 | WP_000332283.1 | site-specific integrase | - |
| EGX72_RS02645 (EGX72_02640) | - | 467197..467601 (-) | 405 | WP_123957713.1 | DUF4429 domain-containing protein | - |
| EGX72_RS02650 (EGX72_02645) | - | 467623..468369 (-) | 747 | WP_000878006.1 | ImmA/IrrE family metallo-endopeptidase | - |
| EGX72_RS02655 (EGX72_02650) | - | 468378..468758 (-) | 381 | WP_000466347.1 | helix-turn-helix domain-containing protein | - |
| EGX72_RS02660 (EGX72_02655) | - | 469046..469210 (+) | 165 | WP_000511144.1 | hypothetical protein | - |
| EGX72_RS02665 (EGX72_02660) | - | 469193..469663 (-) | 471 | WP_001052629.1 | hypothetical protein | - |
| EGX72_RS02670 (EGX72_02665) | - | 469724..469936 (+) | 213 | WP_000082754.1 | helix-turn-helix transcriptional regulator | - |
| EGX72_RS02675 (EGX72_02670) | - | 469936..470181 (+) | 246 | WP_301182292.1 | hypothetical protein | - |
| EGX72_RS02680 (EGX72_02675) | - | 470323..470853 (+) | 531 | WP_001006993.1 | NUMOD4 domain-containing protein | - |
| EGX72_RS02685 (EGX72_02680) | - | 470853..471137 (+) | 285 | WP_000998974.1 | hypothetical protein | - |
| EGX72_RS02690 (EGX72_02685) | - | 471161..471379 (+) | 219 | WP_001061695.1 | hypothetical protein | - |
| EGX72_RS02695 (EGX72_02690) | dnaB | 471388..472719 (+) | 1332 | WP_000343910.1 | replicative DNA helicase | - |
| EGX72_RS02700 (EGX72_02695) | - | 472721..473323 (+) | 603 | WP_000712924.1 | hypothetical protein | - |
| EGX72_RS02705 (EGX72_02700) | - | 473301..474047 (+) | 747 | WP_000079055.1 | conserved phage C-terminal domain-containing protein | - |
| EGX72_RS02710 (EGX72_02705) | - | 474048..474869 (+) | 822 | WP_001067868.1 | ATP-binding protein | - |
| EGX72_RS02715 (EGX72_02710) | - | 474869..476182 (+) | 1314 | WP_000670039.1 | DNA cytosine methyltransferase | - |
| EGX72_RS02720 (EGX72_02715) | - | 476179..476583 (+) | 405 | WP_000220554.1 | hypothetical protein | - |
| EGX72_RS02725 (EGX72_02720) | - | 476576..477067 (+) | 492 | WP_000169322.1 | MazG-like family protein | - |
| EGX72_RS02730 (EGX72_02725) | - | 477067..477396 (+) | 330 | WP_000793494.1 | DUF1372 family protein | - |
| EGX72_RS11790 (EGX72_02730) | - | 477396..477752 (+) | 357 | WP_000158822.1 | DUF3310 domain-containing protein | - |
| EGX72_RS02740 (EGX72_02735) | - | 477749..477955 (+) | 207 | WP_000748199.1 | hypothetical protein | - |
| EGX72_RS02745 (EGX72_02740) | ssb | 477945..478361 (+) | 417 | WP_000609565.1 | single-stranded DNA-binding protein | Machinery gene |
| EGX72_RS02755 (EGX72_02750) | ltrA | 478942..480261 (+) | 1320 | WP_000561483.1 | group II intron reverse transcriptase/maturase | - |
| EGX72_RS02760 (EGX72_02755) | - | 480394..480654 (+) | 261 | WP_001008140.1 | hypothetical protein | - |
| EGX72_RS02765 (EGX72_02760) | - | 480651..480998 (+) | 348 | WP_000776714.1 | helix-turn-helix domain-containing protein | - |
| EGX72_RS02770 (EGX72_02765) | - | 480995..481459 (+) | 465 | WP_000163169.1 | hypothetical protein | - |
| EGX72_RS02775 (EGX72_02770) | - | 481569..482111 (+) | 543 | WP_001028147.1 | site-specific integrase | - |
| EGX72_RS02780 (EGX72_02775) | - | 482401..482688 (+) | 288 | WP_000651008.1 | hypothetical protein | - |
| EGX72_RS02785 (EGX72_02780) | - | 482811..483047 (+) | 237 | WP_253257054.1 | HNH endonuclease | - |
| EGX72_RS02790 (EGX72_02785) | - | 483135..483620 (+) | 486 | WP_000601033.1 | hypothetical protein | - |
| EGX72_RS02795 (EGX72_02790) | - | 483613..485325 (+) | 1713 | WP_000230004.1 | terminase TerL endonuclease subunit | - |
| EGX72_RS02800 (EGX72_02795) | - | 485334..486476 (+) | 1143 | WP_001067328.1 | phage portal protein | - |
| EGX72_RS02805 (EGX72_02800) | - | 486526..487068 (+) | 543 | WP_000413200.1 | HK97 family phage prohead protease | - |
| EGX72_RS02810 (EGX72_02805) | - | 487079..488341 (+) | 1263 | WP_000749069.1 | phage major capsid protein | - |
| EGX72_RS02815 (EGX72_02810) | - | 488362..488697 (+) | 336 | WP_000153862.1 | hypothetical protein | - |
| EGX72_RS02820 (EGX72_02815) | - | 488694..488999 (+) | 306 | WP_000842788.1 | head-tail adaptor protein | - |
| EGX72_RS02825 (EGX72_02820) | - | 488999..489346 (+) | 348 | WP_001074485.1 | hypothetical protein | - |
| EGX72_RS02830 (EGX72_02825) | - | 489333..489677 (+) | 345 | WP_000508737.1 | hypothetical protein | - |
| EGX72_RS02835 (EGX72_02830) | - | 489692..490375 (+) | 684 | WP_000222195.1 | hypothetical protein | - |
| EGX72_RS02840 (EGX72_02835) | - | 490375..490851 (+) | 477 | WP_000591556.1 | hypothetical protein | - |
| EGX72_RS02850 (EGX72_02845) | - | 491037..493772 (+) | 2736 | WP_000140777.1 | phage tail tape measure protein | - |
| EGX72_RS02855 (EGX72_02850) | - | 493769..494491 (+) | 723 | WP_000161556.1 | hypothetical protein | - |
| EGX72_RS02860 (EGX72_02855) | - | 494492..498166 (+) | 3675 | WP_001880132.1 | phage tail spike protein | - |
| EGX72_RS02865 (EGX72_02860) | - | 498183..498413 (+) | 231 | WP_001071123.1 | hypothetical protein | - |
| EGX72_RS02870 (EGX72_02865) | - | 498416..498754 (+) | 339 | WP_000213864.1 | hypothetical protein | - |
| EGX72_RS02875 (EGX72_02870) | - | 498789..499199 (+) | 411 | WP_001135353.1 | hypothetical protein | - |
| EGX72_RS02880 (EGX72_02875) | - | 499202..499531 (+) | 330 | WP_000192161.1 | phage holin | - |
| EGX72_RS02885 (EGX72_02880) | - | 499535..500941 (+) | 1407 | WP_000405193.1 | peptidoglycan amidohydrolase family protein | - |
| EGX72_RS02890 (EGX72_02885) | - | 501148..501333 (+) | 186 | WP_000139836.1 | type II toxin-antitoxin system HicA family toxin | - |
| EGX72_RS02895 (EGX72_02890) | - | 501394..501798 (+) | 405 | WP_000878124.1 | type II toxin-antitoxin system HicB family antitoxin | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 15674.52 Da Isoelectric Point: 4.6604
>NTDB_id=325867 EGX72_RS02745 WP_000609565.1 477945..478361(+) (ssb) [Streptococcus sp. FDAARGOS_521]
MINNVVLIGRLTRDVELRYTPSNIANATFNLAVNRNFKNAAGDREADFINCVMWRQQAENLANWTKKGMLIGITGRIQTR
SYENQQGQRIYVTEVVADSFQILEKRDNSTNQASMDDQLPPSFGNSQPMDISDDDLPF
MINNVVLIGRLTRDVELRYTPSNIANATFNLAVNRNFKNAAGDREADFINCVMWRQQAENLANWTKKGMLIGITGRIQTR
SYENQQGQRIYVTEVVADSFQILEKRDNSTNQASMDDQLPPSFGNSQPMDISDDDLPF
Nucleotide
Download Length: 417 bp
>NTDB_id=325867 EGX72_RS02745 WP_000609565.1 477945..478361(+) (ssb) [Streptococcus sp. FDAARGOS_521]
ATGATCAATAATGTTGTACTTATTGGCCGCTTGACAAGAGATGTTGAGCTACGTTACACGCCGTCAAACATCGCAAACGC
TACTTTTAACCTAGCAGTCAATCGAAATTTCAAGAATGCTGCTGGTGATCGTGAAGCTGATTTCATCAACTGTGTGATGT
GGCGACAACAAGCTGAAAACTTGGCCAATTGGACGAAAAAAGGAATGCTGATTGGTATTACTGGACGAATCCAGACAAGA
AGCTACGAAAATCAGCAAGGTCAGCGTATCTATGTGACTGAGGTTGTTGCTGACAGCTTCCAGATTCTTGAAAAGCGTGA
TAATTCAACGAACCAGGCAAGCATGGATGACCAATTGCCACCATCATTTGGAAATAGTCAGCCTATGGATATTTCAGATG
ATGATCTACCGTTTTGA
ATGATCAATAATGTTGTACTTATTGGCCGCTTGACAAGAGATGTTGAGCTACGTTACACGCCGTCAAACATCGCAAACGC
TACTTTTAACCTAGCAGTCAATCGAAATTTCAAGAATGCTGCTGGTGATCGTGAAGCTGATTTCATCAACTGTGTGATGT
GGCGACAACAAGCTGAAAACTTGGCCAATTGGACGAAAAAAGGAATGCTGATTGGTATTACTGGACGAATCCAGACAAGA
AGCTACGAAAATCAGCAAGGTCAGCGTATCTATGTGACTGAGGTTGTTGCTGACAGCTTCCAGATTCTTGAAAAGCGTGA
TAATTCAACGAACCAGGCAAGCATGGATGACCAATTGCCACCATCATTTGGAAATAGTCAGCCTATGGATATTTCAGATG
ATGATCTACCGTTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.118 |
100 |
0.667 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.575 |
100 |
0.638 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
41.259 |
100 |
0.428 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
76.812 |
0.42 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.559 |
100 |
0.42 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50.943 |
76.812 |
0.391 |