Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IHMA87_RS03640 Genome accession   NZ_CP041354
Coordinates   735496..735993 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 730496..740993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS03625 (IHMA87_00703) bfr 730506..730970 (+) 465 WP_003093668.1 bacterioferritin -
  IHMA87_RS03630 (IHMA87_00704) uvrA 731040..733877 (-) 2838 WP_034079223.1 excinuclease ABC subunit UvrA Machinery gene
  IHMA87_RS03635 (IHMA87_00705) - 734091..735479 (+) 1389 WP_034079222.1 MFS transporter -
  IHMA87_RS03640 (IHMA87_00706) ssb 735496..735993 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  IHMA87_RS03645 (IHMA87_00707) - 736082..737512 (-) 1431 WP_034079221.1 isochorismate synthase -
  IHMA87_RS03650 (IHMA87_00708) pchB 737509..737814 (-) 306 WP_034000079.1 isochorismate lyase PchB -
  IHMA87_RS03655 (IHMA87_00709) - 737814..738569 (-) 756 WP_034079219.1 thioesterase II family protein -
  IHMA87_RS03660 (IHMA87_00710) - 738566..740209 (-) 1644 WP_034079218.1 (2,3-dihydroxybenzoyl)adenylate synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=325575 IHMA87_RS03640 WP_003114685.1 735496..735993(+) (ssb) [Pseudomonas aeruginosa strain AZPAE15042]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=325575 IHMA87_RS03640 WP_003114685.1 735496..735993(+) (ssb) [Pseudomonas aeruginosa strain AZPAE15042]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGCAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAATGGCAGGGCCAGGACGGTCAGGACCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGTCCCTCCGGCGACGACTCGCAGCGCGCCCCGCGCGAACCCATGCAGCGCCCGCAGC
AGGCGCCGCAGCAGCAGTCGCGTCCGGCACCGCAGCAGCAACCTGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515

Multiple sequence alignment