Detailed information NTG0325582

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EGX83_RS18955
• Genome accession: NZ_CP033768
• Coordinates: 3545213..3546073 (-)
• Length: 286 a.a.
• NCBI ID: WP_002126490.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain FDAARGOS_533
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3540213..3551073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGX83_RS16990 (EGX83_16985)	-	3541104..3542414 (+)	1311	WP_123793917.1	tetratricopeptide repeat protein	-
EGX83_RS16995 (EGX83_16990)	-	3542491..3542817 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
EGX83_RS17000 (EGX83_16995)	rlmB	3542919..3543668 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
EGX83_RS17005 (EGX83_17000)	-	3543704..3544618 (+)	915	WP_002126491.1	DMT family transporter	-
EGX83_RS17010 (EGX83_17005)	coaE	3544615..3545211 (-)	597	WP_002126478.1	dephospho-CoA kinase	-
EGX83_RS18955 (EGX83_17010)	pilD	3545213..3546073 (-)	861	WP_002126490.1	prepilin peptidase	Machinery gene
EGX83_RS17020 (EGX83_17015)	pilC	3546073..3547299 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
EGX83_RS17025 (EGX83_17020)	pilB	3547329..3549041 (-)	1713	WP_001274979.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EGX83_RS17030 (EGX83_17025)	tpiA	3549332..3550126 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
EGX83_RS17035 (EGX83_17030)	secG	3550139..3550468 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32086.49 Da
• Isoelectric Point: 7.1041

>NTDB_id=325582 EGX83_RS18955 WP_002126490.1 3545213..3546073(-) (pilD) [Acinetobacter baumannii strain FDAARGOS_533]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLATLGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=325582 EGX83_RS18955 WP_002126490.1 3545213..3546073(-) (pilD) [Acinetobacter baumannii strain FDAARGOS_533]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCCGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAACATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437