Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EEY24_RS04380 Genome accession   NZ_CP033575
Coordinates   728579..729844 (-) Length   421 a.a.
NCBI ID   WP_107111642.1    Uniprot ID   -
Organism   Shewanella algae strain KC-Na-R1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 723579..734844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEY24_RS04355 (EEY24_04350) mutT 725585..725983 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  EEY24_RS04360 (EEY24_04355) yacG 725983..726195 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  EEY24_RS04365 (EEY24_04360) zapD 726240..726980 (-) 741 WP_028779562.1 cell division protein ZapD -
  EEY24_RS04370 (EEY24_04365) coaE 726977..727588 (-) 612 WP_123115556.1 dephospho-CoA kinase -
  EEY24_RS04375 (EEY24_04370) pilD 727589..728503 (-) 915 WP_123115557.1 A24 family peptidase Machinery gene
  EEY24_RS04380 (EEY24_04375) pilC 728579..729844 (-) 1266 WP_107111642.1 type II secretion system F family protein Machinery gene
  EEY24_RS04385 (EEY24_04380) pilB 729995..731701 (-) 1707 WP_123115558.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EEY24_RS04390 (EEY24_04385) - 731762..732193 (-) 432 WP_123115559.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  EEY24_RS04395 (EEY24_04390) nadC 733061..733921 (-) 861 WP_123115560.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EEY24_RS04400 (EEY24_04395) ampD 734113..734658 (+) 546 WP_240647823.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45715.94 Da        Isoelectric Point: 10.3084

>NTDB_id=323997 EEY24_RS04380 WP_107111642.1 728579..729844(-) (pilC) [Shewanella algae strain KC-Na-R1]
MATATATAKSNKAKNKGTKPQPKIHTFTWKGLNRDGKLSSGELRGTSITEVKNLLKGQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTTIELIARGHEKNKVRTLLGTVLADIQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSGS
LDAVFDRIATYKEKSEALKSKIKKAMLYPAAVVIVAMAVTALLLVVVVPQFEEIFRGFGAELPAFTQLIVSLSRGLQSTW
YLFLAGIVISVWLFVRAHRNSENFRNRIDEIVLKIPAIGEILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=323997 EEY24_RS04380 WP_107111642.1 728579..729844(-) (pilC) [Shewanella algae strain KC-Na-R1]
ATGGCAACCGCAACGGCGACAGCAAAAAGCAATAAAGCCAAAAATAAAGGCACTAAGCCCCAGCCCAAGATCCATACCTT
TACCTGGAAAGGCCTCAATCGTGACGGCAAACTCAGTTCCGGTGAACTGCGCGGTACCAGTATCACCGAAGTAAAAAACC
TGCTTAAGGGGCAGGGGATTAACCCCAAGACGGTACGTAAAAAATCAGCGTCTATGTTTGGCGATAAAAAGATCAAGCCG
ATGGATATCGCGGTGATCACCCGTCAGATAGCTACTATGCTGGCTGCCGGGGTTCCCTTGGTAACAACTATTGAATTGAT
CGCCCGCGGCCATGAAAAAAATAAGGTTCGTACTCTACTCGGCACTGTGCTGGCCGATATCCAAGCCGGCATTCCACTCT
CAGATGCCCTCCGCCCACACAGAGTCTATTTTGACGACCTCTATGTCGACTTGGTGGCTGCCGGCGAGCATTCAGGTTCT
TTGGATGCCGTATTCGACCGTATCGCTACTTACAAGGAAAAATCTGAAGCCCTTAAGTCAAAAATTAAAAAAGCTATGCT
GTACCCAGCGGCAGTGGTGATAGTCGCTATGGCGGTAACTGCTTTGCTTCTAGTAGTCGTTGTACCTCAATTTGAAGAAA
TTTTTAGGGGGTTTGGTGCCGAACTGCCAGCTTTTACTCAACTCATTGTTAGTTTAAGTCGAGGTTTGCAAAGCACTTGG
TATCTATTTTTAGCCGGTATCGTTATCAGTGTCTGGCTTTTTGTTCGTGCTCACCGAAATTCAGAAAATTTCCGTAACCG
TATCGATGAAATAGTGCTGAAAATTCCGGCAATAGGAGAAATCCTCCATAAAGGTGCCATGGCTCGCTTTGCCCGTACGC
TGGCTACCACTTTTGCCGCCGGGGTCCCACTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGTAATTATGTCTAC
CGCAAGGCACTGTTAAATGTGCGCACCGAAGTGATGGCCGGTATGCAGATGAATGTGGCCATGCGCACCACCAAGCTATT
CCCTGATATGCTGATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGACAACATGCTCAACAAGATTGCCAATA
TCTACGAGATGCAGGTAGACGATGCCGTAGATGGCCTTTCCAGCCTGATAGAACCTATTATGATGGTAGTTATCGGCACT
ATAGTCGGCGGGCTTATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.639

94.774

0.527
  pilC Legionella pneumophila strain ERS1305867

48.762

95.962

0.468
  pilC Acinetobacter baylyi ADP1

49.118

94.299

0.463
  pilC Vibrio cholerae strain A1552

46.21

97.15

0.449
  pilC Acinetobacter baumannii D1279779

46.734

94.537

0.442
  pilC Vibrio campbellii strain DS40M4

45.161

95.724

0.432
  pilG Neisseria meningitidis 44/76-A

43.117

91.449

0.394
  pilG Neisseria gonorrhoeae MS11

43.117

91.449

0.394

Multiple sequence alignment