Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SMI_RS07715 Genome accession   NC_013853
Coordinates   1534459..1534929 (-) Length   156 a.a.
NCBI ID   WP_000609606.1    Uniprot ID   A0A2I1UFP5
Organism   Streptococcus mitis B6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1529459..1539929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS07685 (smi_1516) - 1529953..1530888 (-) 936 WP_000036041.1 manganese-dependent inorganic pyrophosphatase -
  SMI_RS07690 (smi_1517) - 1531114..1531410 (-) 297 WP_000349604.1 GIY-YIG nuclease family protein -
  SMI_RS07695 (smi_1518) - 1531400..1532149 (-) 750 WP_000390767.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SMI_RS07700 (smi_1519) - 1532202..1532564 (-) 363 WP_000689605.1 S1 RNA-binding domain-containing protein -
  SMI_RS07705 (smi_1520) - 1532566..1533966 (-) 1401 WP_000339039.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  SMI_RS07710 (smi_1521) rpsR 1534188..1534427 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  SMI_RS07715 (smi_1522) ssbA 1534459..1534929 (-) 471 WP_000609606.1 single-stranded DNA-binding protein SsbA Machinery gene
  SMI_RS07720 (smi_1523) rpsF 1534941..1535231 (-) 291 WP_001151779.1 30S ribosomal protein S6 -
  SMI_RS07725 (smi_1524) - 1535468..1536634 (+) 1167 WP_000163009.1 IS30-like element ISSmi1 family transposase -
  SMI_RS07730 (smi_1525) asnS 1537028..1538371 (-) 1344 WP_000167160.1 asparagine--tRNA ligase -
  SMI_RS07735 (smi_1526) - 1538390..1538755 (-) 366 WP_000565232.1 VOC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17352.20 Da        Isoelectric Point: 4.9164

>NTDB_id=32316 SMI_RS07715 WP_000609606.1 1534459..1534929(-) (ssbA) [Streptococcus mitis B6]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=32316 SMI_RS07715 WP_000609606.1 1534459..1534929(-) (ssbA) [Streptococcus mitis B6]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGATGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAACCTAGCTAATTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCATACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCGCCTACAAATTCAGTACCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I1UFP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.609
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.603
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.282

75

0.385
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB/cilA Streptococcus pneumoniae R6

50.427

75

0.378
  ssbB/cilA Streptococcus mitis SK321

50.427

75

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae D39

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378

Multiple sequence alignment