Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D0871_RS03455 | Genome accession | NZ_CP033141 |
| Coordinates | 653614..654033 (-) | Length | 139 a.a. |
| NCBI ID | WP_069514826.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 160807 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 648614..659033
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0871_RS03435 (D0871_03435) | coaE | 649123..649737 (-) | 615 | WP_023624253.1 | dephospho-CoA kinase | - |
| D0871_RS03440 (D0871_03440) | pilD | 649738..650607 (-) | 870 | WP_069514824.1 | A24 family peptidase | Machinery gene |
| D0871_RS03445 (D0871_03445) | pilC | 650672..651895 (-) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| D0871_RS03450 (D0871_03450) | pilB | 651919..653604 (-) | 1686 | WP_023624254.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| D0871_RS03455 (D0871_03455) | pilA | 653614..654033 (-) | 420 | WP_069514826.1 | pilin | Machinery gene |
| D0871_RS03460 (D0871_03460) | nadC | 654297..655184 (-) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| D0871_RS03465 (D0871_03465) | ampD | 655277..655828 (+) | 552 | WP_005479703.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| D0871_RS03470 (D0871_03470) | pdhR | 656234..657001 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14238.22 Da Isoelectric Point: 4.3396
>NTDB_id=321788 D0871_RS03455 WP_069514826.1 653614..654033(-) (pilA) [Vibrio parahaemolyticus strain 160807]
MKHSKQKKQQGFTLIELMIVVAIIGVLAAAAIPAYQNYVTRSEVTSGLATVKALITPAELHYQENGIAAAATLAQLGVDV
AANDLGAIDSALADGSPTLTFTFDADSSIDGGILTFTRDAATGWSCLPTAPAIAVDGCS
MKHSKQKKQQGFTLIELMIVVAIIGVLAAAAIPAYQNYVTRSEVTSGLATVKALITPAELHYQENGIAAAATLAQLGVDV
AANDLGAIDSALADGSPTLTFTFDADSSIDGGILTFTRDAATGWSCLPTAPAIAVDGCS
Nucleotide
Download Length: 420 bp
>NTDB_id=321788 D0871_RS03455 WP_069514826.1 653614..654033(-) (pilA) [Vibrio parahaemolyticus strain 160807]
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTTACTCTTATTGAGTTGATGATTGTAGTGGCGATTATCGGTGTATT
GGCTGCAGCTGCTATCCCTGCTTATCAAAATTATGTGACTCGCTCTGAAGTTACATCAGGGTTAGCAACCGTTAAAGCTC
TGATCACACCGGCTGAGCTGCATTACCAAGAAAATGGTATCGCGGCGGCTGCAACATTAGCCCAATTGGGAGTTGATGTT
GCAGCTAATGACTTAGGAGCTATTGATTCTGCCCTTGCAGATGGTAGTCCAACTCTGACATTTACCTTCGATGCAGACAG
TTCTATCGACGGTGGGATACTAACGTTCACAAGAGACGCTGCAACTGGTTGGTCATGTTTACCTACTGCACCAGCAATTG
CAGTCGATGGTTGCAGTTAA
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTTACTCTTATTGAGTTGATGATTGTAGTGGCGATTATCGGTGTATT
GGCTGCAGCTGCTATCCCTGCTTATCAAAATTATGTGACTCGCTCTGAAGTTACATCAGGGTTAGCAACCGTTAAAGCTC
TGATCACACCGGCTGAGCTGCATTACCAAGAAAATGGTATCGCGGCGGCTGCAACATTAGCCCAATTGGGAGTTGATGTT
GCAGCTAATGACTTAGGAGCTATTGATTCTGCCCTTGCAGATGGTAGTCCAACTCTGACATTTACCTTCGATGCAGACAG
TTCTATCGACGGTGGGATACTAACGTTCACAAGAGACGCTGCAACTGGTTGGTCATGTTTACCTACTGCACCAGCAATTG
CAGTCGATGGTTGCAGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
99.281 |
100 |
0.993 |
| pilA | Pseudomonas aeruginosa PAK |
47.761 |
96.403 |
0.46 |
| pilA | Vibrio cholerae strain A1552 |
41.892 |
100 |
0.446 |
| pilA | Vibrio cholerae C6706 |
41.892 |
100 |
0.446 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.892 |
100 |
0.446 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.552 |
96.403 |
0.381 |
| pilA | Acinetobacter baumannii strain A118 |
40.157 |
91.367 |
0.367 |