Detailed information NTG0321785

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D0871_RS03440
• Genome accession: NZ_CP033141
• Coordinates: 649738..650607 (-)
• Length: 289 a.a.
• NCBI ID: WP_069514824.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 160807
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 644738..655607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0871_RS03405 (D0871_03405)	rpsP	645714..645962 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
D0871_RS03410 (D0871_03410)	rimM	645991..646539 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
D0871_RS03415 (D0871_03415)	trmD	646567..647310 (+)	744	WP_023624251.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
D0871_RS03420 (D0871_03420)	rplS	647352..647705 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
D0871_RS03425 (D0871_03425)	yacG	648092..648286 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
D0871_RS03430 (D0871_03430)	zapD	648355..649095 (-)	741	WP_023624252.1	cell division protein ZapD	-
D0871_RS03435 (D0871_03435)	coaE	649123..649737 (-)	615	WP_023624253.1	dephospho-CoA kinase	-
D0871_RS03440 (D0871_03440)	pilD	649738..650607 (-)	870	WP_069514824.1	A24 family peptidase	Machinery gene
D0871_RS03445 (D0871_03445)	pilC	650672..651895 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
D0871_RS03450 (D0871_03450)	pilB	651919..653604 (-)	1686	WP_023624254.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D0871_RS03455 (D0871_03455)	pilA	653614..654033 (-)	420	WP_069514826.1	pilin	Machinery gene
D0871_RS03460 (D0871_03460)	nadC	654297..655184 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32403.47 Da
• Isoelectric Point: 6.8205

>NTDB_id=321785 D0871_RS03440 WP_069514824.1 649738..650607(-) (pilD) [Vibrio parahaemolyticus strain 160807]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFALIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWLVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=321785 D0871_RS03440 WP_069514824.1 649738..650607(-) (pilD) [Vibrio parahaemolyticus strain 160807]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACAGTTGCGTTAA
TCTTTTTCACATTTGCCTTAATAGCCGCGACGTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTTAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453