Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D0812_RS03070 | Genome accession | NZ_CP033137 |
| Coordinates | 606672..607076 (-) | Length | 134 a.a. |
| NCBI ID | WP_054824001.1 | Uniprot ID | A0AAP9K975 |
| Organism | Vibrio owensii strain 1700302 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 601672..612076
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0812_RS03050 (D0812_03050) | coaE | 602173..602787 (-) | 615 | WP_009707571.1 | dephospho-CoA kinase | - |
| D0812_RS03055 (D0812_03055) | pilD | 602788..603657 (-) | 870 | WP_041058619.1 | A24 family peptidase | Machinery gene |
| D0812_RS03060 (D0812_03060) | pilC | 603730..604953 (-) | 1224 | WP_009707569.1 | type II secretion system F family protein | Machinery gene |
| D0812_RS03065 (D0812_03065) | pilB | 604987..606672 (-) | 1686 | WP_054824002.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| D0812_RS03070 (D0812_03070) | pilA | 606672..607076 (-) | 405 | WP_054824001.1 | pilin | Machinery gene |
| D0812_RS03080 (D0812_03080) | nadC | 607341..608228 (-) | 888 | WP_054824000.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| D0812_RS03085 (D0812_03085) | ampD | 608321..608872 (+) | 552 | WP_005438027.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| D0812_RS03090 (D0812_03090) | pdhR | 609278..610045 (+) | 768 | WP_005438026.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13631.59 Da Isoelectric Point: 6.9451
>NTDB_id=321741 D0812_RS03070 WP_054824001.1 606672..607076(-) (pilA) [Vibrio owensii strain 1700302]
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKGEAATALGSLRALVTPAELKLQQDGELSGAVSDLGGSAS
HALGNITTTGAGVSAAVLTFTFTKGSLSGDAITLTKSTSGWVCNDGTTILDNCN
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKGEAATALGSLRALVTPAELKLQQDGELSGAVSDLGGSAS
HALGNITTTGAGVSAAVLTFTFTKGSLSGDAITLTKSTSGWVCNDGTTILDNCN
Nucleotide
Download Length: 405 bp
>NTDB_id=321741 D0812_RS03070 WP_054824001.1 606672..607076(-) (pilA) [Vibrio owensii strain 1700302]
ATGAAAACGAATAAACAGAAAAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTAGCGATTATCGGTGTACT
GTCCGCAATTGCAGTTCCCGCTTATCAAAATTATGTAGCAAAAGGGGAAGCAGCTACAGCACTTGGTAGCCTAAGAGCTC
TAGTTACACCTGCAGAGTTAAAACTGCAGCAAGATGGCGAACTATCTGGTGCGGTGTCTGACTTAGGCGGCTCTGCCTCA
CATGCCTTAGGTAATATAACGACAACAGGCGCAGGTGTCAGTGCTGCTGTGCTGACATTTACCTTTACAAAAGGATCTCT
ATCTGGTGACGCGATTACTTTAACTAAGTCAACTTCAGGTTGGGTTTGTAACGACGGTACAACTATCTTAGATAACTGTA
ATTAA
ATGAAAACGAATAAACAGAAAAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTAGCGATTATCGGTGTACT
GTCCGCAATTGCAGTTCCCGCTTATCAAAATTATGTAGCAAAAGGGGAAGCAGCTACAGCACTTGGTAGCCTAAGAGCTC
TAGTTACACCTGCAGAGTTAAAACTGCAGCAAGATGGCGAACTATCTGGTGCGGTGTCTGACTTAGGCGGCTCTGCCTCA
CATGCCTTAGGTAATATAACGACAACAGGCGCAGGTGTCAGTGCTGCTGTGCTGACATTTACCTTTACAAAAGGATCTCT
ATCTGGTGACGCGATTACTTTAACTAAGTCAACTTCAGGTTGGGTTTGTAACGACGGTACAACTATCTTAGATAACTGTA
ATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.756 |
94.776 |
0.5 |
| pilA | Pseudomonas aeruginosa PAK |
43.284 |
100 |
0.433 |
| pilA | Vibrio cholerae strain A1552 |
38.406 |
100 |
0.396 |
| pilA | Vibrio cholerae C6706 |
38.406 |
100 |
0.396 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.406 |
100 |
0.396 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.686 |
100 |
0.396 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.323 |
92.537 |
0.373 |