Detailed information NTG0321738

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D0812_RS03055
• Genome accession: NZ_CP033137
• Coordinates: 602788..603657 (-)
• Length: 289 a.a.
• NCBI ID: WP_041058619.1
• Uniprot ID: A0AAP9GA24
• Organism: Vibrio owensii strain 1700302
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 597788..608657

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0812_RS03020 (D0812_03020)	rpsP	598778..599026 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
D0812_RS03025 (D0812_03025)	rimM	599057..599605 (+)	549	WP_005438038.1	ribosome maturation factor RimM	-
D0812_RS03030 (D0812_03030)	trmD	599633..600376 (+)	744	WP_054824003.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
D0812_RS03035 (D0812_03035)	rplS	600418..600771 (+)	354	WP_005438036.1	50S ribosomal protein L19	-
D0812_RS03040 (D0812_03040)	yacG	601148..601348 (-)	201	WP_027726863.1	DNA gyrase inhibitor YacG	-
D0812_RS03045 (D0812_03045)	zapD	601405..602145 (-)	741	WP_054824030.1	cell division protein ZapD	-
D0812_RS03050 (D0812_03050)	coaE	602173..602787 (-)	615	WP_009707571.1	dephospho-CoA kinase	-
D0812_RS03055 (D0812_03055)	pilD	602788..603657 (-)	870	WP_041058619.1	A24 family peptidase	Machinery gene
D0812_RS03060 (D0812_03060)	pilC	603730..604953 (-)	1224	WP_009707569.1	type II secretion system F family protein	Machinery gene
D0812_RS03065 (D0812_03065)	pilB	604987..606672 (-)	1686	WP_054824002.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D0812_RS03070 (D0812_03070)	pilA	606672..607076 (-)	405	WP_054824001.1	pilin	Machinery gene
D0812_RS03080 (D0812_03080)	nadC	607341..608228 (-)	888	WP_054824000.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32648.87 Da
• Isoelectric Point: 7.8754

>NTDB_id=321738 D0812_RS03055 WP_041058619.1 602788..603657(-) (pilD) [Vibrio owensii strain 1700302]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEKLTLSVPRSSCQQCGTQIRIR
DNIPVISWLLLRGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALSGISPVNLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=321738 D0812_RS03055 WP_041058619.1 602788..603657(-) (pilD) [Vibrio owensii strain 1700302]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACGATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTTGTTATTTATCGATTACCCAAAATCATGGAATTAGAATGGCGACGCGAATGCGCGGAATCGTTCCCTGAATATAAAA
TAGAACCACCAAAAGAGAAGCTGACATTAAGCGTACCACGCTCATCTTGTCAGCAATGTGGTACGCAAATTCGTATTCGT
GACAATATCCCAGTGATTAGTTGGCTGCTTCTACGCGGTAAATGCCACAACTGCCAATCTCCTATCAGTGCACGCTATCC
TCTTATCGAACTGCTTACTGCCTTTTGTTCGGGTTTTATCGCTTTTCACTTCGGTTTTAGCTACTTCACTGTCGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCCGCCACGTTTATCGATCTCGATACCATGTTGTTGCCAGACCAGCTTACATTGCCA
TTAATGTGGGCAGGTATTGCGCTCGCGCTTTCTGGTATCAGTCCTGTGAACCTACAAGACTCCATCATTGGTGCTATGGC
AGGTTATCTGTGTCTTTGGAGTGTTTACTGGTTGTTTAAGCTCCTTACAGGCAAAGAAGGCATGGGTTATGGTGACTTTA
AACTCCTTGCCGCATTAGGTGCTTGGTTGGGTTGGCAATCGCTACCGATGATCATTCTGCTTTCATCAGTAGTGGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCAATTGC
GGGATGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.924	100	0.979
pilD	Vibrio cholerae strain A1552	75.347	99.654	0.751
pilD	Acinetobacter baumannii D1279779	52.364	95.156	0.498
pilD	Acinetobacter nosocomialis M2	52.364	95.156	0.498
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436