Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CDG68_RS20310 Genome accession   NZ_CP033133
Coordinates   3626369..3627595 (+) Length   408 a.a.
NCBI ID   WP_087552280.1    Uniprot ID   -
Organism   Acinetobacter wuhouensis strain WCHAW010062     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3621369..3632595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG68_RS20270 (CDG68_20275) rimP 3621899..3622423 (-) 525 WP_087552284.1 ribosome maturation factor RimP -
  CDG68_RS20295 (CDG68_20300) secG 3623222..3623554 (-) 333 WP_087552283.1 preprotein translocase subunit SecG -
  CDG68_RS20300 (CDG68_20305) tpiA 3623564..3624358 (-) 795 WP_087552282.1 triose-phosphate isomerase -
  CDG68_RS20305 (CDG68_20310) pilB 3624612..3626336 (+) 1725 WP_087552281.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CDG68_RS20310 (CDG68_20315) pilC 3626369..3627595 (+) 1227 WP_087552280.1 type II secretion system F family protein Machinery gene
  CDG68_RS20315 (CDG68_20320) pilD 3627595..3628455 (+) 861 WP_087552279.1 prepilin peptidase Machinery gene
  CDG68_RS20320 (CDG68_20325) coaE 3628494..3629105 (+) 612 WP_087552278.1 dephospho-CoA kinase -
  CDG68_RS20325 (CDG68_20330) - 3629118..3630035 (-) 918 WP_087552277.1 DMT family transporter -
  CDG68_RS20330 (CDG68_20335) rlmB 3630092..3630844 (-) 753 WP_068973848.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CDG68_RS20335 (CDG68_20340) - 3631022..3631345 (-) 324 WP_068973849.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45077.63 Da        Isoelectric Point: 9.8732

>NTDB_id=321667 CDG68_RS20310 WP_087552280.1 3626369..3627595(+) (pilC) [Acinetobacter wuhouensis strain WCHAW010062]
MAINNAQVMPTFTYEGVDRKGGKIKGELSARNLALAKVTLRKQGISIKTIRQKRKNILEGLFKKKISTLDITIFTRQLAT
MMKAGVPLILSFEIVAEGLENPTMRDLVLNLKKEVEGGSTFADALQKYPQHFDPLFCSLVESGEISGALETMLDRVAIYK
EKSELLKQKIKKAMKYPMAVICVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQSYWFLMIIGIGLVIT
LFLESKKRSKKFRNTLDKLALKLPIFGDLIYKSIIARYSRTLATTFAAGVPLIDALKSTAGATNNVIYEDAVMKIREDVA
TGQQLNFAMKTSNLFPSMAVQMVAIGEESGALDTMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=321667 CDG68_RS20310 WP_087552280.1 3626369..3627595(+) (pilC) [Acinetobacter wuhouensis strain WCHAW010062]
ATGGCAATTAATAATGCTCAAGTGATGCCAACTTTTACTTATGAAGGAGTTGATCGTAAAGGGGGAAAAATTAAAGGGGA
GTTATCAGCAAGGAACTTAGCTCTTGCGAAAGTAACCTTGCGAAAGCAGGGCATCAGCATTAAAACTATCCGTCAAAAGC
GTAAAAATATTCTAGAGGGATTATTTAAGAAAAAAATATCCACTTTAGATATTACTATTTTTACCCGACAATTAGCGACA
ATGATGAAAGCTGGTGTTCCGTTAATTTTAAGCTTTGAAATTGTTGCTGAAGGCTTAGAAAATCCAACCATGAGAGATTT
AGTTCTCAATTTAAAAAAAGAAGTAGAGGGCGGAAGTACTTTTGCAGATGCTTTACAAAAATACCCACAACATTTCGACC
CATTATTTTGCTCTTTAGTCGAGTCTGGTGAAATCTCTGGTGCATTAGAGACAATGCTAGATCGTGTTGCGATCTATAAA
GAAAAATCAGAACTTCTTAAGCAAAAAATTAAAAAAGCCATGAAATACCCAATGGCAGTTATTTGCGTTGCAATCATCGT
CACCATTATTCTAATGGTTAAAGTTGTTCCTGTGTTCCAAGACTTATTTAGCTCATTTGGTGCTGATCTACCGGCTTTCA
CCCAAATGGTCGTAAATATGTCGAAATGGATGCAATCTTACTGGTTCCTTATGATTATTGGGATAGGATTAGTCATTACT
CTTTTTCTAGAGTCCAAGAAACGTAGTAAAAAATTTCGCAATACACTAGATAAATTGGCTTTAAAACTGCCAATTTTTGG
TGATTTAATTTACAAATCCATTATTGCTCGTTATAGCCGTACTTTAGCGACTACTTTCGCTGCTGGTGTACCTTTAATTG
ATGCACTTAAGTCAACAGCTGGTGCAACCAATAATGTAATTTACGAAGATGCTGTAATGAAAATTCGGGAAGATGTAGCT
ACTGGTCAACAACTTAATTTTGCAATGAAGACATCCAACTTATTTCCTTCAATGGCAGTTCAAATGGTTGCCATTGGCGA
AGAATCAGGTGCATTGGATACCATGCTAGATAAAGTTGCAACACACTTTGAAAATGAAGTGGATAATGCTGTTGATGGCT
TAACTTCGATGATGGAACCACTCATCATGGCTATACTTGGTGTACTTGTTGGTGGTCTCGTAATTGCAATGTATCTTCCA
ATCTTCCAAATGGGTTCAGTAGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

86.275

100

0.863
  pilC Acinetobacter baylyi ADP1

79.657

100

0.797
  pilC Pseudomonas stutzeri DSM 10701

61.179

99.755

0.61
  pilC Legionella pneumophila strain ERS1305867

53.465

99.02

0.529
  pilG Neisseria meningitidis 44/76-A

46.115

97.794

0.451
  pilG Neisseria gonorrhoeae MS11

46.115

97.794

0.451
  pilC Vibrio cholerae strain A1552

41.584

99.02

0.412
  pilC Vibrio campbellii strain DS40M4

40.394

99.51

0.402

Multiple sequence alignment