Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EAO82_RS11545 Genome accession   NZ_CP033116
Coordinates   2451099..2451383 (+) Length   94 a.a.
NCBI ID   WP_096345854.1    Uniprot ID   A0AA91Z780
Organism   Halopseudomonas pelagia strain Kongs-67     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2446099..2456383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAO82_RS11525 (EAO82_11575) - 2446964..2447557 (+) 594 WP_096345850.1 SPOR domain-containing protein -
  EAO82_RS11530 (EAO82_11580) - 2447620..2448102 (+) 483 WP_096345851.1 CvpA family protein -
  EAO82_RS11535 (EAO82_11585) purF 2448160..2449665 (+) 1506 WP_096345852.1 amidophosphoribosyltransferase -
  EAO82_RS11540 (EAO82_11590) - 2449734..2450951 (+) 1218 WP_096345853.1 O-succinylhomoserine sulfhydrylase -
  EAO82_RS11545 (EAO82_11595) comEA 2451099..2451383 (+) 285 WP_096345854.1 ComEA family DNA-binding protein Machinery gene
  EAO82_RS11550 (EAO82_11600) - 2451421..2452869 (-) 1449 WP_231703197.1 methyl-accepting chemotaxis protein -
  EAO82_RS11555 (EAO82_11605) rnd 2453063..2454208 (+) 1146 WP_410402924.1 ribonuclease D -
  EAO82_RS11560 (EAO82_11610) - 2454205..2454498 (+) 294 WP_096345855.1 YcgL domain-containing protein -
  EAO82_RS11565 (EAO82_11615) - 2454500..2454742 (-) 243 WP_096345856.1 DUF3820 family protein -
  EAO82_RS11570 (EAO82_11620) - 2454829..2455200 (+) 372 WP_096345857.1 glutathione S-transferase N-terminal domain-containing protein -
  EAO82_RS11575 (EAO82_11625) - 2455222..2455809 (+) 588 WP_096345858.1 TetR/AcrR family transcriptional regulator -
  EAO82_RS11580 (EAO82_11630) queD 2455818..2456174 (-) 357 WP_096345859.1 6-carboxytetrahydropterin synthase QueD -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 9786.19 Da        Isoelectric Point: 4.4963

>NTDB_id=321619 EAO82_RS11545 WP_096345854.1 2451099..2451383(+) (comEA) [Halopseudomonas pelagia strain Kongs-67]
MKHFILAVCLSFASVFALPALAESTPAPVVSVNINSASADEIAEVLQGVGQAKAQAIVDYRESNGAFAAIEDLGEVKGIG
EATLAKNQERITLK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=321619 EAO82_RS11545 WP_096345854.1 2451099..2451383(+) (comEA) [Halopseudomonas pelagia strain Kongs-67]
ATGAAGCATTTTATTCTTGCTGTTTGTCTTTCTTTTGCCTCGGTCTTTGCCCTGCCTGCTCTGGCAGAATCCACTCCAGC
CCCTGTGGTCAGCGTCAACATCAATTCTGCCAGTGCCGATGAGATTGCCGAAGTGCTCCAGGGCGTAGGTCAGGCCAAGG
CTCAGGCGATTGTCGACTACCGCGAATCCAATGGCGCCTTTGCCGCGATTGAAGACCTGGGGGAGGTCAAGGGTATTGGC
GAGGCTACCCTGGCCAAGAATCAGGAGCGGATCACCCTGAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(30-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

51.515

100

0.543
  comEA Vibrio cholerae strain A1552

51.515

100

0.543
  comEA Vibrio parahaemolyticus RIMD 2210633

51.579

100

0.521
  comEA/comE1 Glaesserella parasuis strain SC1401

44.762

100

0.5
  comE1/comEA Haemophilus influenzae Rd KW20

51.899

84.043

0.436
  comEA Vibrio campbellii strain DS40M4

43.011

98.936

0.426
  comE Neisseria gonorrhoeae MS11

44.444

95.745

0.426
  comE Neisseria gonorrhoeae MS11

44.444

95.745

0.426
  comE Neisseria gonorrhoeae MS11

44.444

95.745

0.426
  comE Neisseria gonorrhoeae MS11

44.444

95.745

0.426
  comEA Legionella pneumophila str. Paris

36.364

100

0.383
  comEA Legionella pneumophila strain ERS1305867

36.364

100

0.383

Multiple sequence alignment